Hi, thanks for your answer.
The first thing i did yesterday was a fresh installation deleting sw.
This is what I did (in alice folder):
aliBuild init O2@dev --defaults o2
aliBuild init O2Physics@master --defaults o2
aliBuild init QualityControl@master --defaults o2
aliBuild build O2Suite --defaults o2
with the last comment giving the error.
No upgrade of the system was made with respect to some months ago were everything worked fine.
After I found this problem, reading on the forum here:
it was stated that someone solved this by updating aliBuild.
I did it by following the instructions for my OS and with the updated aliBuild I tried to install O2Suite (using the exact same command specified above, after deleting all folders in alice).
And i had the exact same problem at the exact same point.
Exactly after this I wrote here to ask for solutions.
This is the output have now with aliDoctor (using aliDoctor --defaults o2 O2Suite):
WARNING: Package golang cannot be picked up from the system and will be built by aliBuild.
WARNING: This is due to the fact the following script fails:
WARNING:
WARNING: REQUESTED_VERSION=1.22.2
WARNING: type go && case go version | sed -e 's/go version go//' | sed -e 's/ .*//' in 1.2[2-9].*) exit 0 ;; *) exit 1 ;; esac
WARNING:
WARNING: with the following output:
WARNING:
WARNING: golang: /bin/bash: line 1: type: go: not found
WARNING:
SUCCESS: Package CMake will be picked up from the system.
SUCCESS: Package libuv will be picked up from the system.
WARNING: Package FFTW3 cannot be picked up from the system and will be built by aliBuild.
WARNING: This is due to the fact the following script fails:
WARNING:
WARNING: REQUESTED_VERSION=v3.3.9
WARNING: false
WARNING:
WARNING: with the following output:
WARNING:
WARNING: FFTW3:
WARNING:
SUCCESS: Package lz4 will be picked up from the system.
SUCCESS: Package libpng will be picked up from the system.
SUCCESS: Package zlib will be picked up from the system.
WARNING: Package lzma cannot be picked up from the system and will be built by aliBuild.
WARNING: This is due to the fact the following script fails:
WARNING:
WARNING: REQUESTED_VERSION=v5.2.3
WARNING: printf “#include <lzma.h>\n” | c++ -xc++ - -c -M 2>&1
WARNING:
WARNING: with the following output:
WARNING:
WARNING: lzma: :1:10: fatal error: ‘lzma.h’ file not found
WARNING: lzma: #include <lzma.h>
WARNING: lzma: ^~~~~~~~
WARNING: lzma: 1 error generated.
WARNING:
SUCCESS: Package bz2 will be picked up from the system.
SUCCESS: Package Python will be picked up from the system.
SUCCESS: Package FreeType will be picked up from the system.
SUCCESS: Required package Python-system will be picked up from the system.
WARNING: Package hdf5 cannot be picked up from the system and will be built by aliBuild.
WARNING: This is due to the fact the following script fails:
WARNING:
WARNING: REQUESTED_VERSION=1.10.9
WARNING: printf “#include <hdf5.h>\n” | cc -xc - -c -o /dev/null
WARNING:
WARNING: with the following output:
WARNING:
WARNING: hdf5: :1:10: fatal error: ‘hdf5.h’ file not found
WARNING: hdf5: #include <hdf5.h>
WARNING: hdf5: ^~~~~~~~
WARNING: hdf5: 1 error generated.
WARNING:
SUCCESS: Required package rsync will be picked up from the system.
SUCCESS: Package GSL will be picked up from the system.
SUCCESS: Package libxml2 will be picked up from the system.
SUCCESS: Required package osx-system-openssl will be picked up from the system.
WARNING: Package TBB cannot be picked up from the system and will be built by aliBuild.
WARNING: This is due to the fact the following script fails:
WARNING:
WARNING: REQUESTED_VERSION=v2021.5.0
WARNING: printf “#include <tbb/concurrent_unordered_map.h>\n static_assert(TBB_INTERFACE_VERSION >= 11009, "min version check failed");\n” | c++ -std=c++11 -xc++ - -c -o /dev/null
WARNING:
WARNING: with the following output:
WARNING:
WARNING: TBB: :1:10: fatal error: ‘tbb/concurrent_unordered_map.h’ file not found
WARNING: TBB: #include <tbb/concurrent_unordered_map.h>
WARNING: TBB: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
WARNING: TBB: 1 error generated.
WARNING:
SUCCESS: Required package Xcode will be picked up from the system.
SUCCESS: Package xercesc will be picked up from the system.
==> The following packages will be built by aliBuild because
usage of a system version of it is not allowed or supported, by policy:
- Monitoring
- flatbuffers
- QualityControl
- GMP
- re2
- Alice-GRID-Utils
- FairRoot
- Configuration
- ZeroMQ
- HepMC3
- double-conversion
- fastjet
- MPFR
- bookkeeping-api
- libInfoLogger
- Readout
- XRootD
- pythia
- moderncppkafka
- UUID
- defaults-release
- ms_gsl
- Python-modules-list
- simulation
- lhapdf
- GEANT4_VMC
- coconut
- FairMQ
- Ppconsul
- GEANT3
- curl
- xjalienfs
- libwebsockets
- protobuf
- O2-customization
- librdkafka
- VecGeom
- Common-O2
- GEANT4
- ITSResponse
- xsimd
- abseil
- Control-Core
- ONNXRuntime
- vgm
- GLFW
- MLModels
- cgal
- AliEn-CAs
- KFParticle
- FairLogger
- boost
- pythia6
- O2Physics
- AliEn-Runtime
- HepMC
- utf8proc
- libjalienO2
- ninja
- O2
- FairCMakeModules
- MCStepLogger
- Vc
- alibuild-recipe-tools
- JAliEn-ROOT
- generators
- arrow
- DebugGUI
- CodingGuidelines
- ROOT
- fmt
- O2Suite
- Python-modules
- googlebenchmark
- RapidJSON
- VMC
- c-ares
- grpc
- json-c
- ApMon-CPP
- Control-OCCPlugin
==> The following packages will be picked up from the system:
- CMake
- libxml2
- xercesc
- FreeType
- Python
- zlib
- lz4
- libuv
- bz2
- GSL
- libpng
If this is not you want, you have to uninstall / unload them.
==> The following packages will be built by aliBuild because they couldn’t be picked up from the system:
- lzma
- hdf5
- TBB
- golang
- FFTW3
This is not a real issue, but it might take longer the first time you invoke aliBuild.
Look at the error messages above to get hints on what packages you need to install separately.