Alienv: not updating modulefiles

Dear experts
I build o2 on Scientific linux 7 according to instructions
But it doesn’t work.
What did I miss?

Regards, Dmitry.

[fitdaq@j91 alice]$ uname -a
Linux j91.localdomain 3.10.0-693.2.2.el7.x86_64 #1 SMP Tue Sep 12 10:10:26 CDT 2017 x86_64 x86_64 x86_64 GNU/Linux

[fitdaq@j91 alice]$ alienv enter O2/latest-dev-o2
WARNING: not updating modulefiles
grpc(12):ERROR:105: Unable to locate a modulefile for 'grpc/-'
Ppconsul(12):ERROR:105: Unable to locate a modulefile for 'Ppconsul/-'
Ppconsul(12):ERROR:105: Unable to locate a modulefile for 'Ppconsul/-'
Currently Loaded Modulefiles:

  1. BASE/1.0 14) pythia/v8230-1
  2. GCC-Toolchain/v6.2.0-alice1-1 15) ZeroMQ/v4.1.5-1
  3. GSL/v1.16-1 16) nanomsg/v1.0.0+git_c52f1bedca-1
  4. ROOT/v6-10-08-1 17) DDS/1.7-1
  5. GEANT3/v2-5-1 18) FairRoot/alice-dev-20171027-1
  6. GEANT4/v10.3.3-1 19) Vc/1.3.2-1
  7. vgm/v4-4-1 20) HepMC3/3.0.0-1
  8. GEANT4_VMC/v3-5-1 21) O2HLTCATracking/hlt_o2_ca_tracking-v1.3-1
  9. protobuf/v3.0.2-1 22) Common-O2/v1.2.0-1
  10. pythia6/428-alice1-1 23) Configuration/v1.2.1-1
  11. boost/v1.64.0-alice1-1 24) Monitoring/v1.3.0-1
  12. yaml-cpp/v0.5.2-1 25) O2/latest-dev-o2
  13. lhapdf/v6.1.6-1
    Use alienv list to list loaded modules. Use exit to exit this environment.
    [O2/latest-dev-o2] ~/alice $> o2sim -h
    o2sim: error while loading shared libraries: libCore.so.6.12: cannot open shared object file: No such file or directory

[fitdaq@j91 alice]$ aliDoctor O2 --defaults o2
WARNING: Package Vc cannot be picked up from the system and will be built by aliBuild.
WARNING: This is due to the fact the following script fails:
WARNING:
WARNING: brew() { true; }; printf “#include <Vc/version.h>\n#if Vc_VERSION_CHECK(1,3,2) > Vc_VERSION_NUMBER\n#error Incorrect Vc version\n#endif” | c++ -xc++ - -c -M 2>&1
WARNING:
WARNING: with the following output:
WARNING:
WARNING: Vc: :1:24: fatal error: Vc/version.h: No such file or directory
WARNING: Vc: compilation terminated.
WARNING: Vc:
WARNING:
WARNING: Package ZeroMQ cannot be picked up from the system and will be built by aliBuild.
WARNING: This is due to the fact the following script fails:
WARNING:
WARNING: brew() { true; }; printf “#include <zmq.h>\n#if(ZMQ_VERSION < 40103)\n#error “zmq version >= 4.1.3 needed”\n#endif\n int main(){}” | gcc -I$(brew --prefix zeromq)/include $([[ -d $(brew --prefix zeromq) ]] || echo “-l:libzmq.a”) -xc++ - -o /dev/null 2>&1
WARNING:
WARNING: with the following output:
WARNING:
WARNING: ZeroMQ: :1:17: fatal error: zmq.h: No such file or directory
WARNING: ZeroMQ: compilation terminated.
WARNING: ZeroMQ:
WARNING:
WARNING: Package nanomsg cannot be picked up from the system and will be built by aliBuild.
WARNING: This is due to the fact the following script fails:
WARNING:
WARNING: brew() { true; }; printf “#include “nanomsg/nn.h”\nint main(){}” | cc -I$(brew --prefix nanomsg)/include -Wno-deprecated-declarations -xc - -o /dev/null
WARNING:
WARNING: with the following output:
WARNING:
WARNING: nanomsg: :1:24: fatal error: nanomsg/nn.h: No such file or directory
WARNING: nanomsg: compilation terminated.
WARNING: nanomsg:
WARNING:
WARNING: Package boost cannot be picked up from the system and will be built by aliBuild.
WARNING: This is due to the fact the following script fails:
WARNING:
WARNING: brew() { true; }; printf “#include “boost/version.hpp”\n# if (BOOST_VERSION < 106600 || BOOST_VERSION > 106699)\n#error “Cannot use system’s boost: boost 1.66 required.”\n#endif\nint main(){}” | gcc -I$(brew --prefix boost)/include -xc++ - -o /dev/null
WARNING:
WARNING: with the following output:
WARNING:
WARNING: boost: :1:29: fatal error: boost/version.hpp: No such file or directory
WARNING: boost: compilation terminated.
WARNING: boost:
WARNING:
WARNING: Package protobuf cannot be picked up from the system and will be built by aliBuild.
WARNING: This is due to the fact the following script fails:
WARNING:
WARNING: brew() { true; }; printf “#include “google/protobuf/stubs/common.h”\n#if (GOOGLE_PROTOBUF_VERSION < 3000000)\n#error “At least protobuf 3.0.0 is required.”\n#endif\nint main(){}” | c++ -I$(brew --prefix protobuf)/include -Wno-deprecated-declarations -xc++ - -o /dev/null && protoc -h &> /dev/null
WARNING:
WARNING: with the following output:
WARNING:
WARNING: protobuf: :1:42: fatal error: google/protobuf/stubs/common.h: No such file or directory
WARNING: protobuf: compilation terminated.
WARNING: protobuf:
WARNING:
WARNING: Package GCC-Toolchain cannot be picked up from the system and will be built by aliBuild.
WARNING: This is due to the fact the following script fails:
WARNING:
WARNING: brew() { true; }; set -e
WARNING: which gfortran || { echo “gfortran missing”; exit 1; }
WARNING: which cc && test -f $(dirname $(which cc))/c++ && printf “#define GCCVER ((GNUC << 16)+(GNUC_MINOR << 8)+(GNUC_PATCHLEVEL))\n#if (GCCVER < 0x060200)\n#error “System’s GCC cannot be used: we need at least GCC 6.X. We are going to compile our own version.”\n#endif\n” | cc -xc++ - -c -o /dev/null
WARNING:
WARNING: with the following output:
WARNING:
WARNING: GCC-Toolchain: /usr/bin/gfortran
WARNING: GCC-Toolchain: /usr/bin/cc
WARNING: GCC-Toolchain: :3:2: error: #error "System’s GCC cannot be used: we need at least GCC 6.X. We are going to compile our own version."
WARNING: GCC-Toolchain:
WARNING:
WARNING: Package CMake cannot be picked up from the system and will be built by aliBuild.
WARNING: This is due to the fact the following script fails:
WARNING:
WARNING: brew() { true; }; which cmake && case cmake --version | sed -e 's/.* //' | cut -d. -f1,2,3 | head -n1 in [0-2]|3.[0-9].|3.10.*) exit 1 ;; esac
WARNING:
WARNING: with the following output:
WARNING:
WARNING: CMake: which: no cmake in (/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/home/fitdaq/.local/bin:/home/fitdaq/bin)
WARNING: CMake:
WARNING:
SUCCESS: Required package curl will be picked up from the system.
WARNING: Package GSL cannot be picked up from the system and will be built by aliBuild.
WARNING: This is due to the fact the following script fails:
WARNING:
WARNING: brew() { true; }; printf “#include “gsl/gsl_version.h”\n#define GSL_V GSL_MAJOR_VERSION * 100 + GSL_MINOR_VERSION\n# if (GSL_V < 116)\n#error “Cannot use system’s gsl. Notice we only support versions from 1.16 (included)”\n#endif\nint main(){}” | gcc -I$(brew --prefix gsl)/include -xc++ - -o /dev/null
WARNING:
WARNING: with the following output:
WARNING:
WARNING: GSL: :1:29: fatal error: gsl/gsl_version.h: No such file or directory
WARNING: GSL: compilation terminated.
WARNING: GSL:
WARNING:
SUCCESS: Required package opengl will be picked up from the system.
SUCCESS: Required package Xdevel will be picked up from the system.
SUCCESS: Package FreeType will be picked up from the system.
SUCCESS: Package Python-modules will be picked up from the system.
SUCCESS: Package libpng will be picked up from the system.
SUCCESS: Package lzma will be picked up from the system.
SUCCESS: Package autotools will be picked up from the system.
SUCCESS: Required package bz2 will be picked up from the system.
SUCCESS: Required package yacc-like will be picked up from the system.
WARNING: Package yaml-cpp cannot be picked up from the system and will be built by aliBuild.
WARNING: This is due to the fact the following script fails:
WARNING:
WARNING: brew() { true; }; printf “#include “yaml-cpp/yaml.h”\n” | gcc -Ibrew --prefix yaml-cpp/include -Ibrew --prefix boost/include -xc++ - -c -o /dev/null
WARNING:
WARNING: with the following output:
WARNING:
WARNING: yaml-cpp: :1:27: fatal error: yaml-cpp/yaml.h: No such file or directory
WARNING: yaml-cpp: compilation terminated.
WARNING: yaml-cpp:
WARNING:

==> The following packages will be picked up from the system:

- Python-modules
- libpng
- FreeType
- lzma
- autotools

If this is not you want, you have to uninstall / unload them.

==> The following packages will be build by aliBuild because they couldn’t be picked up from the system:

- Vc
- CMake
- protobuf
- GCC-Toolchain
- yaml-cpp
- nanomsg
- ZeroMQ
- boost
- GSL

This is not a real issue, but it might take longer the first time you invoke aliBuild.
Look at the error messages above to get hints on what packages you need to install separately.

[fitdaq@j91 alice]$

[fitdaq@j91 alice]$ alienv q
WARNING: not updating modulefiles
VO_ALICE@ApMon-CPP::latest
VO_ALICE@ApMon-CPP::latest-o2-daq
VO_ALICE@ApMon-CPP::v2.2.8-alice1-1
VO_ALICE@BASE::1.0
VO_ALICE@boost::latest
VO_ALICE@boost::latest-dev-o2
VO_ALICE@boost::latest-o2-daq
VO_ALICE@boost::v1.64.0-alice1-1
VO_ALICE@CMake::latest
VO_ALICE@CMake::latest-dev-o2
VO_ALICE@CMake::latest-o2-daq
VO_ALICE@CMake::v3.9.4-1
VO_ALICE@Common-O2::latest
VO_ALICE@Common-O2::latest-dev-o2
VO_ALICE@Common-O2::latest-o2-daq
VO_ALICE@Common-O2::v1.2.0-1
VO_ALICE@Configuration::latest
VO_ALICE@Configuration::latest-dev-o2
VO_ALICE@Configuration::latest-o2-daq
VO_ALICE@Configuration::v1.2.1-1
VO_ALICE@Configuration::v1.2.1-2
VO_ALICE@DataSampling::latest
VO_ALICE@DataSampling::latest-o2-daq
VO_ALICE@DataSampling::v0.1.0-1
VO_ALICE@DDS::1.7-1
VO_ALICE@DDS::latest
VO_ALICE@DDS::latest-dev-o2
VO_ALICE@DDS::latest-o2-daq
VO_ALICE@dim::latest
VO_ALICE@dim::latest-o2-daq
VO_ALICE@dim::v20r20-1
VO_ALICE@FairRoot::alice-dev-20171027-1
VO_ALICE@FairRoot::alice-dev-20171027-2
VO_ALICE@FairRoot::latest
VO_ALICE@FairRoot::latest-dev-o2
VO_ALICE@FairRoot::latest-o2-daq
VO_ALICE@flpproto::latest
VO_ALICE@flpproto::latest-o2-daq
VO_ALICE@flpproto::v0.7.0-1
VO_ALICE@GCC-Toolchain::latest
VO_ALICE@GCC-Toolchain::latest-dev-o2
VO_ALICE@GCC-Toolchain::latest-o2-daq
VO_ALICE@GCC-Toolchain::v6.2.0-alice1-1
VO_ALICE@GEANT3::latest
VO_ALICE@GEANT3::latest-dev-o2
VO_ALICE@GEANT3::v2-5-1
VO_ALICE@GEANT4::latest
VO_ALICE@GEANT4::latest-dev-o2
VO_ALICE@GEANT4::v10.3.3-1
VO_ALICE@GEANT4_VMC::latest
VO_ALICE@GEANT4_VMC::latest-dev-o2
VO_ALICE@GEANT4_VMC::v3-5-1
VO_ALICE@generators::latest
VO_ALICE@generators::latest-dev-o2
VO_ALICE@generators::v1.0-1
VO_ALICE@grpc::latest
VO_ALICE@grpc::latest-o2-daq
VO_ALICE@grpc::v1.2.5-1
VO_ALICE@GSL::latest
VO_ALICE@GSL::latest-dev-o2
VO_ALICE@GSL::latest-o2-daq
VO_ALICE@GSL::v1.16-1
VO_ALICE@HepMC3::3.0.0-1
VO_ALICE@HepMC3::latest
VO_ALICE@HepMC3::latest-dev-o2
VO_ALICE@HepMC3::latest-o2-daq
VO_ALICE@hijing::latest
VO_ALICE@hijing::latest-dev-o2
VO_ALICE@hijing::v1.36-1
VO_ALICE@InfoLogger::latest
VO_ALICE@InfoLogger::latest-o2-daq
VO_ALICE@InfoLogger::v1.0.2-1
VO_ALICE@lhapdf::latest
VO_ALICE@lhapdf::latest-dev-o2
VO_ALICE@lhapdf::v6.1.6-1
VO_ALICE@Monitoring::latest
VO_ALICE@Monitoring::latest-dev-o2
VO_ALICE@Monitoring::latest-o2-daq
VO_ALICE@Monitoring::v1.3.0-1
VO_ALICE@Monitoring::v1.3.0-2
VO_ALICE@nanomsg::latest
VO_ALICE@nanomsg::latest-dev-o2
VO_ALICE@nanomsg::v1.0.0+git_c52f1bedca-1
VO_ALICE@O2::0_O2_DAQ-1
VO_ALICE@O2::dev-1
VO_ALICE@O2::latest
VO_ALICE@O2::latest-dev-o2
VO_ALICE@O2::latest-o2-daq
VO_ALICE@O2HLTCATracking::hlt_o2_ca_tracking-v1.3-1
VO_ALICE@O2HLTCATracking::latest
VO_ALICE@O2HLTCATracking::latest-dev-o2
VO_ALICE@O2HLTCATracking::latest-o2-daq
VO_ALICE@PDA::12.0.0-1
VO_ALICE@PDA::latest
VO_ALICE@PDA::latest-o2-daq
VO_ALICE@Ppconsul::0.0.1-1
VO_ALICE@Ppconsul::latest
VO_ALICE@Ppconsul::latest-o2-daq
VO_ALICE@protobuf::latest
VO_ALICE@protobuf::latest-dev-o2
VO_ALICE@protobuf::latest-o2-daq
VO_ALICE@protobuf::v3.0.2-1
VO_ALICE@pythia::latest
VO_ALICE@pythia::latest-dev-o2
VO_ALICE@pythia::v8230-1
VO_ALICE@pythia6::428-alice1-1
VO_ALICE@pythia6::latest
VO_ALICE@pythia6::latest-dev-o2
VO_ALICE@QualityControl::latest
VO_ALICE@QualityControl::latest-o2-daq
VO_ALICE@QualityControl::v0.2.0-1
VO_ALICE@RapidJSON::1.1.0-1
VO_ALICE@RapidJSON::latest
VO_ALICE@RapidJSON::latest-dev-o2
VO_ALICE@RapidJSON::latest-o2-daq
VO_ALICE@Readout::latest
VO_ALICE@Readout::latest-o2-daq
VO_ALICE@Readout::v0.1.0-1
VO_ALICE@ReadoutCard::latest
VO_ALICE@ReadoutCard::latest-o2-daq
VO_ALICE@ReadoutCard::v0.8.1-1
VO_ALICE@ROOT::latest
VO_ALICE@ROOT::latest-dev-o2
VO_ALICE@ROOT::latest-o2-daq
VO_ALICE@ROOT::v6-10-08-1
VO_ALICE@simulation::latest
VO_ALICE@simulation::latest-dev-o2
VO_ALICE@simulation::v1.0-1
VO_ALICE@Vc::1.3.2-1
VO_ALICE@Vc::latest
VO_ALICE@Vc::latest-dev-o2
VO_ALICE@Vc::latest-o2-daq
VO_ALICE@vgm::latest
VO_ALICE@vgm::latest-dev-o2
VO_ALICE@vgm::v4-4-1
VO_ALICE@yaml-cpp::latest
VO_ALICE@yaml-cpp::latest-dev-o2
VO_ALICE@yaml-cpp::v0.5.2-1
VO_ALICE@ZeroMQ::latest
VO_ALICE@ZeroMQ::latest-dev-o2
VO_ALICE@ZeroMQ::latest-o2-daq
VO_ALICE@ZeroMQ::v4.1.5-1
[fitdaq@j91 alice]$

Hi,

The build finished successfully right ?

As a side note, you could install the devtoolset for CC7 to avoid rebuilding GCC : https://linux.web.cern.ch/linux/centos7/docs/softwarecollections.shtml#inst

Cheers,
Barth

Hi, on top of what @bvonhall said: for reference the instructions are here and they also mention devtoolset.

From your output I see:

$> alienv enter O2/latest-dev-o2
WARNING: not updating modulefiles
grpc(12):ERROR:105: Unable to locate a modulefile for 'grpc/-'
Ppconsul(12):ERROR:105: Unable to locate a modulefile for 'Ppconsul/-'
Ppconsul(12):ERROR:105: Unable to locate a modulefile for 'Ppconsul/-'

The line saying WARNING: not updating modulefiles pops up if your filesystem is readonly in the sw/MODULES directory. Are you, by chance, building on a shared partition? Can you check the permissions of sw?

I had a problem with devtoolset at the begining

[O2/latest-dev-o2] /home/fitdaq/alice $> yum install -y centos-release-scl
Loaded plugins: langpacks
Package 10:centos-release-scl-6-8.el6.noarch already installed and latest version
Nothing to do
[O2/latest-dev-o2] /home/fitdaq/alice $> yum-config-manager --enable rhel-server-rhscl-7-rpms
Loaded plugins: langpacks
[O2/latest-dev-o2] /home/fitdaq/alice $> yum install -y devtoolset-6
Loaded plugins: langpacks
No package devtoolset-6 available.
Error: Nothing to do

rights check:

[fitdaq@j91 alice]$ ls -la
total 20
drwxrwxr-x. 5 fitdaq fitdaq 41 Dec 11 13:55 .
drwx------. 33 fitdaq fitdaq 4096 Apr 26 18:34 …
drwxrwxr-x. 4 fitdaq fitdaq 8192 Apr 25 18:41 alidist
drwxrwxr-x. 19 fitdaq fitdaq 4096 Apr 26 11:43 O2
drwxrwxr-x. 10 fitdaq fitdaq 126 Apr 26 11:38 sw
[fitdaq@j91 alice]$ ls -la sw
total 12
drwxrwxr-x. 10 fitdaq fitdaq 126 Apr 26 11:38 .
drwxrwxr-x. 5 fitdaq fitdaq 41 Dec 11 13:55 …
drwxrwxr-x. 6 fitdaq fitdaq 236 Apr 26 11:38 BUILD
drwxrwxr-x. 6 fitdaq fitdaq 198 Apr 26 11:38 INSTALLROOT
drwxrwxr-x. 42 fitdaq fitdaq 4096 Apr 25 18:43 MIRROR
drwxrwxr-x. 3 fitdaq fitdaq 25 Jan 15 11:09 MODULES
drwxrwxr-x. 46 fitdaq fitdaq 4096 Apr 26 11:38 slc7_x86-64
drwxrwxr-x. 46 fitdaq fitdaq 4096 Apr 25 18:43 SOURCES
drwxrwxr-x. 3 fitdaq fitdaq 25 Dec 11 14:46 SPECS
drwxrwxr-x. 3 fitdaq fitdaq 25 Dec 11 14:46 TARS

also packets upgraded as in tutorial

[O2/latest-dev-o2] /home/fitdaq/alice $> yum install -y git python mysql-devel curl curl-devel python python-devel python-pip bzip2 bzip2-devel autoconf automake texinfo gettext gettext-devel libtool freetype freetype-devel libpng libpng-devel sqlite sqlite-devel ncurses-devel mesa-libGLU-devel libX11-devel libXpm-devel libXext-devel libXft-devel libxml2 libxml2-devel motif motif-devel kernel-devel pciutils-devel kmod-devel bison flex perl-ExtUtils-Embed environment-modules
Loaded plugins: langpacks
rhscl-centos-release-scl | 3.0 kB 00:00:00
sl | 4.0 kB 00:00:00
sl-fastbugs | 2.9 kB 00:00:00
sl-security | 2.9 kB 00:00:00
epel/x86_64/primary_db | 6.3 MB 00:00:00
Package git-1.8.3.1-12.el7_4.x86_64 already installed and latest version
Package python-2.7.5-58.el7.x86_64 already installed and latest version
Package 1:mariadb-devel-5.5.56-2.el7.x86_64 already installed and latest version
Package curl-7.29.0-42.el7_4.1.x86_64 already installed and latest version
Package libcurl-devel-7.29.0-42.el7_4.1.x86_64 already installed and latest version
Package python-2.7.5-58.el7.x86_64 already installed and latest version
Package python-devel-2.7.5-58.el7.x86_64 already installed and latest version
Package bzip2-1.0.6-13.el7.x86_64 already installed and latest version
Package bzip2-devel-1.0.6-13.el7.x86_64 already installed and latest version
Package autoconf-2.69-11.el7.noarch already installed and latest version
Package automake-1.13.4-3.el7.noarch already installed and latest version
Package texinfo-5.1-4.el7.x86_64 already installed and latest version
Package gettext-0.19.8.1-2.el7.x86_64 already installed and latest version
Package gettext-devel-0.19.8.1-2.el7.x86_64 already installed and latest version
Package libtool-2.4.2-22.el7_3.x86_64 already installed and latest version
Package freetype-2.4.11-15.el7.x86_64 already installed and latest version
Package freetype-devel-2.4.11-15.el7.x86_64 already installed and latest version
Package 2:libpng-1.5.13-7.el7_2.x86_64 already installed and latest version
Package 2:libpng-devel-1.5.13-7.el7_2.x86_64 already installed and latest version
Package sqlite-3.7.17-8.el7.x86_64 already installed and latest version
Package sqlite-devel-3.7.17-8.el7.x86_64 already installed and latest version
Package ncurses-devel-5.9-14.20130511.el7_4.x86_64 already installed and latest version
Package mesa-libGLU-devel-9.0.0-4.el7.x86_64 already installed and latest version
Package libX11-devel-1.6.5-1.el7.x86_64 already installed and latest version
Package libXpm-devel-3.5.12-1.el7.x86_64 already installed and latest version
Package libXext-devel-1.3.3-3.el7.x86_64 already installed and latest version
Package libXft-devel-2.3.2-2.el7.x86_64 already installed and latest version
Package libxml2-2.9.1-6.el7_2.3.x86_64 already installed and latest version
Package libxml2-devel-2.9.1-6.el7_2.3.x86_64 already installed and latest version
Package pciutils-devel-3.5.1-2.el7.x86_64 already installed and latest version
Package bison-3.0.4-1.el7.x86_64 already installed and latest version
Package flex-2.5.37-3.el7.x86_64 already installed and latest version
Package environment-modules-3.2.10-10.el7.x86_64 already installed and latest version
Resolving Dependencies
–> Running transaction check
—> Package kernel-devel.x86_64 0:3.10.0-693.21.1.el7 will be installed
—> Package kmod-devel.x86_64 0:20-15.el7_4.6 will be updated
—> Package kmod-devel.x86_64 0:20-15.el7_4.7 will be an update
–> Processing Dependency: kmod-libs(x86-64) = 20-15.el7_4.7 for package: kmod-devel-20-15.el7_4.7.x86_64
—> Package motif.x86_64 0:2.3.4-10.el7_4 will be updated
—> Package motif.x86_64 0:2.3.4-12.el7_4 will be an update
—> Package motif-devel.x86_64 0:2.3.4-10.el7_4 will be updated
—> Package motif-devel.x86_64 0:2.3.4-12.el7_4 will be an update
—> Package perl-ExtUtils-Embed.noarch 0:1.30-292.el7 will be installed
–> Processing Dependency: perl-devel for package: perl-ExtUtils-Embed-1.30-292.el7.noarch
—> Package python2-pip.noarch 0:8.1.2-6.el7 will be installed
–> Running transaction check
—> Package kmod-libs.x86_64 0:20-15.el7_4.6 will be updated
—> Package kmod-libs.x86_64 0:20-15.el7_4.7 will be an update
—> Package perl-devel.x86_64 4:5.16.3-292.el7 will be installed
–> Processing Dependency: gdbm-devel for package: 4:perl-devel-5.16.3-292.el7.x86_64
–> Processing Dependency: libdb-devel for package: 4:perl-devel-5.16.3-292.el7.x86_64
–> Processing Dependency: perl(ExtUtils::Installed) for package: 4:perl-devel-5.16.3-292.el7.x86_64
–> Processing Dependency: perl(ExtUtils::MakeMaker) for package: 4:perl-devel-5.16.3-292.el7.x86_64
–> Processing Dependency: perl(ExtUtils::ParseXS) for package: 4:perl-devel-5.16.3-292.el7.x86_64
–> Processing Dependency: systemtap-sdt-devel for package: 4:perl-devel-5.16.3-292.el7.x86_64
–> Running transaction check
—> Package gdbm-devel.x86_64 0:1.10-8.el7 will be installed
—> Package libdb-devel.x86_64 0:5.3.21-21.el7_4 will be installed
–> Processing Dependency: libdb(x86-64) = 5.3.21-21.el7_4 for package: libdb-devel-5.3.21-21.el7_4.x86_64
—> Package perl-ExtUtils-Install.noarch 0:1.58-292.el7 will be installed
—> Package perl-ExtUtils-MakeMaker.noarch 0:6.68-3.el7 will be installed
–> Processing Dependency: perl(ExtUtils::Manifest) for package: perl-ExtUtils-MakeMaker-6.68-3.el7.noarch
—> Package perl-ExtUtils-ParseXS.noarch 1:3.18-3.el7 will be installed
—> Package systemtap-sdt-devel.x86_64 0:3.1-5.el7_4 will be installed
–> Processing Dependency: pyparsing for package: systemtap-sdt-devel-3.1-5.el7_4.x86_64
–> Running transaction check
—> Package libdb.x86_64 0:5.3.21-20.el7 will be updated
–> Processing Dependency: libdb(x86-64) = 5.3.21-20.el7 for package: libdb-utils-5.3.21-20.el7.x86_64
—> Package libdb.x86_64 0:5.3.21-21.el7_4 will be an update
—> Package perl-ExtUtils-Manifest.noarch 0:1.61-244.el7 will be installed
—> Package pyparsing.noarch 0:1.5.6-9.el7 will be installed
–> Running transaction check
—> Package libdb-utils.x86_64 0:5.3.21-20.el7 will be updated
—> Package libdb-utils.x86_64 0:5.3.21-21.el7_4 will be an update
–> Finished Dependency Resolution

Dependencies Resolved

====================================================================================================================
Package Arch Version Repository Size

Installing:
kernel-devel x86_64 3.10.0-693.21.1.el7 sl-security 13 M
perl-ExtUtils-Embed noarch 1.30-292.el7 sl 49 k
python2-pip noarch 8.1.2-6.el7 epel 1.7 M
Updating:
kmod-devel x86_64 20-15.el7_4.7 sl-fastbugs 13 k
motif x86_64 2.3.4-12.el7_4 sl-fastbugs 1.3 M
motif-devel x86_64 2.3.4-12.el7_4 sl-fastbugs 1.3 M
Installing for dependencies:
gdbm-devel x86_64 1.10-8.el7 sl 46 k
libdb-devel x86_64 5.3.21-21.el7_4 sl-fastbugs 35 k
perl-ExtUtils-Install noarch 1.58-292.el7 sl 73 k
perl-ExtUtils-MakeMaker noarch 6.68-3.el7 sl 274 k
perl-ExtUtils-Manifest noarch 1.61-244.el7 sl 30 k
perl-ExtUtils-ParseXS noarch 1:3.18-3.el7 sl 76 k
perl-devel x86_64 4:5.16.3-292.el7 sl 452 k
pyparsing noarch 1.5.6-9.el7 sl 93 k
systemtap-sdt-devel x86_64 3.1-5.el7_4 sl-fastbugs 67 k
Updating for dependencies:
kmod-libs x86_64 20-15.el7_4.7 sl-fastbugs 48 k
libdb x86_64 5.3.21-21.el7_4 sl-fastbugs 670 k
libdb-utils x86_64 5.3.21-21.el7_4 sl-fastbugs 127 k

Transaction Summary

Install 3 Packages (+9 Dependent packages)
Upgrade 3 Packages (+3 Dependent packages)

Total download size: 19 M
Downloading packages:
No Presto metadata available for sl-security
No Presto metadata available for sl-fastbugs
(1/18): kmod-devel-20-15.el7_4.7.x86_64.rpm | 13 kB 00:00:00
(2/18): gdbm-devel-1.10-8.el7.x86_64.rpm | 46 kB 00:00:00
(3/18): libdb-devel-5.3.21-21.el7_4.x86_64.rpm | 35 kB 00:00:00
(4/18): libdb-utils-5.3.21-21.el7_4.x86_64.rpm | 127 kB 00:00:01
(5/18): motif-2.3.4-12.el7_4.x86_64.rpm | 1.3 MB 00:00:01
(6/18): libdb-5.3.21-21.el7_4.x86_64.rpm | 670 kB 00:00:02
(7/18): perl-ExtUtils-Embed-1.30-292.el7.noarch.rpm | 49 kB 00:00:00
(8/18): perl-ExtUtils-MakeMaker-6.68-3.el7.noarch.rpm | 274 kB 00:00:00
(9/18): kmod-libs-20-15.el7_4.7.x86_64.rpm | 48 kB 00:00:03
(10/18): perl-ExtUtils-Manifest-1.61-244.el7.noarch.rpm | 30 kB 00:00:00
(11/18): perl-ExtUtils-ParseXS-3.18-3.el7.noarch.rpm | 76 kB 00:00:00
(12/18): perl-devel-5.16.3-292.el7.x86_64.rpm | 452 kB 00:00:00
(13/18): pyparsing-1.5.6-9.el7.noarch.rpm | 93 kB 00:00:00
(14/18): systemtap-sdt-devel-3.1-5.el7_4.x86_64.rpm | 67 kB 00:00:00
(15/18): python2-pip-8.1.2-6.el7.noarch.rpm | 1.7 MB 00:00:00
(16/18): perl-ExtUtils-Install-1.58-292.el7.noarch.rpm | 73 kB 00:00:03
(17/18): kernel-devel-3.10.0-693.21.1.el7.x86_64.rpm | 13 MB 00:00:07
(18/18): motif-devel-2.3.4-12.el7_4.x86_64.rpm | 1.3 MB 00:00:06

Total 2.4 MB/s | 19 MB 00:00:07
Running transaction check
Running transaction test
Transaction test succeeded
Running transaction
Updating : libdb-5.3.21-21.el7_4.x86_64 1/24
Installing : libdb-devel-5.3.21-21.el7_4.x86_64 2/24
Updating : motif-2.3.4-12.el7_4.x86_64 3/24
Installing : gdbm-devel-1.10-8.el7.x86_64 4/24
Installing : pyparsing-1.5.6-9.el7.noarch 5/24
Installing : systemtap-sdt-devel-3.1-5.el7_4.x86_64 6/24
Installing : perl-ExtUtils-Manifest-1.61-244.el7.noarch 7/24
Installing : 1:perl-ExtUtils-ParseXS-3.18-3.el7.noarch 8/24
Installing : 4:perl-devel-5.16.3-292.el7.x86_64 9/24
Installing : perl-ExtUtils-Install-1.58-292.el7.noarch 10/24
Installing : perl-ExtUtils-MakeMaker-6.68-3.el7.noarch 11/24
Updating : kmod-libs-20-15.el7_4.7.x86_64 12/24
Updating : kmod-devel-20-15.el7_4.7.x86_64 13/24
Installing : perl-ExtUtils-Embed-1.30-292.el7.noarch 14/24
Updating : motif-devel-2.3.4-12.el7_4.x86_64 15/24
Updating : libdb-utils-5.3.21-21.el7_4.x86_64 16/24
Installing : python2-pip-8.1.2-6.el7.noarch 17/24
Installing : kernel-devel-3.10.0-693.21.1.el7.x86_64 18/24
Cleanup : kmod-devel-20-15.el7_4.6.x86_64 19/24
Cleanup : motif-devel-2.3.4-10.el7_4.x86_64 20/24
Cleanup : libdb-utils-5.3.21-20.el7.x86_64 21/24
Cleanup : libdb-5.3.21-20.el7.x86_64 22/24
Cleanup : motif-2.3.4-10.el7_4.x86_64 23/24
Cleanup : kmod-libs-20-15.el7_4.6.x86_64 24/24
Verifying : kmod-libs-20-15.el7_4.7.x86_64 1/24
Verifying : kernel-devel-3.10.0-693.21.1.el7.x86_64 2/24
Verifying : perl-ExtUtils-Manifest-1.61-244.el7.noarch 3/24
Verifying : libdb-utils-5.3.21-21.el7_4.x86_64 4/24
Verifying : pyparsing-1.5.6-9.el7.noarch 5/24
Verifying : gdbm-devel-1.10-8.el7.x86_64 6/24
Verifying : perl-ExtUtils-MakeMaker-6.68-3.el7.noarch 7/24
Verifying : python2-pip-8.1.2-6.el7.noarch 8/24
Verifying : 4:perl-devel-5.16.3-292.el7.x86_64 9/24
Verifying : 1:perl-ExtUtils-ParseXS-3.18-3.el7.noarch 10/24
Verifying : motif-devel-2.3.4-12.el7_4.x86_64 11/24
Verifying : perl-ExtUtils-Embed-1.30-292.el7.noarch 12/24
Verifying : libdb-devel-5.3.21-21.el7_4.x86_64 13/24
Verifying : motif-2.3.4-12.el7_4.x86_64 14/24
Verifying : perl-ExtUtils-Install-1.58-292.el7.noarch 15/24
Verifying : systemtap-sdt-devel-3.1-5.el7_4.x86_64 16/24
Verifying : kmod-devel-20-15.el7_4.7.x86_64 17/24
Verifying : libdb-5.3.21-21.el7_4.x86_64 18/24
Verifying : motif-2.3.4-10.el7_4.x86_64 19/24
Verifying : kmod-devel-20-15.el7_4.6.x86_64 20/24
Verifying : libdb-utils-5.3.21-20.el7.x86_64 21/24
Verifying : kmod-libs-20-15.el7_4.6.x86_64 22/24
Verifying : motif-devel-2.3.4-10.el7_4.x86_64 23/24
Verifying : libdb-5.3.21-20.el7.x86_64 24/24

Installed:
kernel-devel.x86_64 0:3.10.0-693.21.1.el7 perl-ExtUtils-Embed.noarch 0:1.30-292.el7
python2-pip.noarch 0:8.1.2-6.el7

Dependency Installed:
gdbm-devel.x86_64 0:1.10-8.el7 libdb-devel.x86_64 0:5.3.21-21.el7_4
perl-ExtUtils-Install.noarch 0:1.58-292.el7 perl-ExtUtils-MakeMaker.noarch 0:6.68-3.el7
perl-ExtUtils-Manifest.noarch 0:1.61-244.el7 perl-ExtUtils-ParseXS.noarch 1:3.18-3.el7
perl-devel.x86_64 4:5.16.3-292.el7 pyparsing.noarch 0:1.5.6-9.el7
systemtap-sdt-devel.x86_64 0:3.1-5.el7_4

Updated:
kmod-devel.x86_64 0:20-15.el7_4.7 motif.x86_64 0:2.3.4-12.el7_4 motif-devel.x86_64 0:2.3.4-12.el7_4

Dependency Updated:
kmod-libs.x86_64 0:20-15.el7_4.7 libdb.x86_64 0:5.3.21-21.el7_4 libdb-utils.x86_64 0:5.3.21-21.el7_4

Complete!

refresh and building again

[fitdaq@j91 alice]$ cd O2
[fitdaq@j91 O2]$ git pull --rebase
remote: Counting objects: 8980, done.
remote: Compressing objects: 100% (2578/2578), done.
remote: Total 8980 (delta 6109), reused 8827 (delta 6108), pack-reused 148
Receiving objects: 100% (8980/8980), 16.64 MiB | 1.68 MiB/s, done.
Resolving deltas: 100% (6118/6118), completed with 192 local objects.
From https://github.com/AliceO2Group/AliceO2
6a9ed96…727f572 dev -> origin/dev

  • 01b3c2b…42828f3 gh-pages -> origin/gh-pages (forced update)
    First, rewinding head to replay your work on top of it…
    Fast-forwarded dev to 727f5721a384e1330b1b03319133b665bb0efb9d.
    [fitdaq@j91 O2]$ cd …/alidist/
    [fitdaq@j91 alidist]$ git pull --rebase
    Current branch master is up to date.
    [fitdaq@j91 alidist]$ cd …
    [fitdaq@j91 alice]$ aliBuild --defaults o2 build O2

==> aliBuild can take the following packages from the system and will not build them:
libpng, lzma, FreeType, autotools, Python

==> The following packages cannot be taken from the system and will be built:
Python-modules, Vc, CMake, protobuf, GCC-Toolchain, yaml-cpp, nanomsg, ZeroMQ, boost, GSL

==> Packages will be built in the following order:
- Python-modules@1.0
- ms_gsl@b014508
- GCC-Toolchain@v6.2.0-alice1
- boost@v1.66.0
- ZeroMQ@v4.1.5
- CMake@v3.11.0
- GSL@release-1-16
- protobuf@v3.0.2
- O2HLTCATracking@hlt_o2_ca_tracking-v1.7
- Vc@1.3.3
- Monitoring@v1.6.0
- googlebenchmark@v1.3.0
- pythia6@428-alice1
- DDS@2.0
- googletest@release-1.8.0
- yaml-cpp@release-0.5.2
- nanomsg@c52f1bedca6b72fb31b473929d99f2fe90a13445
- hijing@v1.36
- GEANT4@v10.3.3
- RapidJSON@v1.1.0-alice1
- ROOT@v6-12-04
- lhapdf@v6.2.1-alice1
- Configuration@v1.4.1
- vgm@v4-4
- HepMC3@d43693ce0e7731e9b787dbd6176cb6245fd770b3
- GEANT3@v2-5
- pythia@v8230
- GEANT4_VMC@v3-5
- generators@v1.0
- simulation@v1.0
- FairRoot@alice-dev-20180413
- O2 (development package)

==> You have packages in development mode.
This means their source code can be freely modified under:

  /home/fitdaq/alice/<package_name>

aliBuild does not automatically update such packages to avoid work loss.
In most cases this is achieved by doing in the package source directory:

  git pull --rebase

Using cached build for defaults-release

==> Building Python-modules@1.0
==> Python-modules is being built (use --debug for full output): ok
Using cached build for Python-modules
Using cached build for ms_gsl
Using cached build for GCC-Toolchain

==> Building boost@v1.66.0
==> boost is being built (use --debug for full output): ok
Using cached build for boost
Using cached build for ZeroMQ
Using cached build for CMake
Using cached build for GSL
Using cached build for protobuf
Using cached build for O2HLTCATracking
Using cached build for Vc

==> Building Monitoring@v1.6.0
==> Monitoring is being built (use --debug for full output): ok
Using cached build for Monitoring
Using cached build for googlebenchmark
Using cached build for pythia6

==> Building DDS@2.0
==> DDS is being built (use --debug for full output): ok
Using cached build for DDS
Using cached build for googletest

==> Building yaml-cpp@v0.5.2
==> yaml-cpp is being built (use --debug for full output): ok
Using cached build for yaml-cpp
Using cached build for hijing
Using cached build for GEANT4
Using cached build for RapidJSON

==> Building ROOT@v6-12-04
==> ROOT is being built (use --debug for full output): ok
Using cached build for ROOT

==> Building lhapdf@v6.2.1-alice1
==> lhapdf is being built (use --debug for full output): ok
Using cached build for lhapdf

==> Building Configuration@v1.4.1
==> Configuration is being built (use --debug for full output): ok
Using cached build for Configuration

==> Building vgm@v4-4
==> vgm is being built (use --debug for full output): ok
Using cached build for vgm

==> Building HepMC3@v3.0.0+git_d43693ce0e
==> HepMC3 is being built (use --debug for full output): ok

==> Building GEANT3@v2-5
==> GEANT3 is being built (use --debug for full output): ok
Using cached build for GEANT3

==> Building pythia@v8230
==> pythia is being built (use --debug for full output): ok
Using cached build for pythia

==> Building GEANT4_VMC@v3-5
==> GEANT4_VMC is being built (use --debug for full output): ok
Using cached build for GEANT4_VMC

==> Building generators@v1.0
==> generators is being built (use --debug for full output): ok
Using cached build for generators

==> Building simulation@v1.0
==> simulation is being built (use --debug for full output): ok
Using cached build for simulation

==> Building FairRoot@alice-dev-20180413
==> FairRoot is being built (use --debug for full output): ok
Using cached build for FairRoot

==> Building O2@dev
==> O2 is being built (use --debug for full output): ok

==> Build of O2 successfully completed on `j91.localdomain’.
Your software installation is at:

  /home/fitdaq/alice/sw/slc7_x86-64

You can use this package by loading the environment:

  alienv enter O2/latest-dev-o2

==> Build directory for devel package O2:
/home/fitdaq/alice/sw/BUILD/O2-latest/O2
[fitdaq@j91 alice]$
[fitdaq@j91 alice]$
[fitdaq@j91 alice]$ alienv enter O2/latest-dev-o2
WARNING: not updating modulefiles
grpc(12):ERROR:105: Unable to locate a modulefile for 'grpc/-'
Ppconsul(12):ERROR:105: Unable to locate a modulefile for 'Ppconsul/-'
Ppconsul(12):ERROR:105: Unable to locate a modulefile for 'Ppconsul/-'
Currently Loaded Modulefiles:

  1. BASE/1.0 10) pythia6/428-alice1-1 19) Vc/1.3.2-1
  2. GCC-Toolchain/v6.2.0-alice1-1 11) boost/v1.64.0-alice1-1 20) HepMC3/3.0.0-1
  3. GSL/v1.16-1 12) yaml-cpp/v0.5.2-1 21) O2HLTCATracking/hlt_o2_ca_tracking-v1.3-1
  4. ROOT/v6-10-08-1 13) lhapdf/v6.1.6-1 22) Common-O2/v1.2.0-1
  5. GEANT3/v2-5-1 14) pythia/v8230-1 23) Configuration/v1.2.1-1
  6. GEANT4/v10.3.3-1 15) ZeroMQ/v4.1.5-1 24) Monitoring/v1.3.0-1
  7. vgm/v4-4-1 16) nanomsg/v1.0.0+git_c52f1bedca-1 25) O2/latest-dev-o2
  8. GEANT4_VMC/v3-5-1 17) DDS/1.7-1
  9. protobuf/v3.0.2-1 18) FairRoot/alice-dev-20171027-1
    Use alienv list to list loaded modules. Use exit to exit this environment.
    [O2/latest-dev-o2] ~/alice $> o2sim -h
    o2sim: error while loading shared libraries: libCore.so.6.12: cannot open shared object file: No such file or directory
    [O2/latest-dev-o2] ~/alice $>

Hi,

For the devtoolset, it should have worked :slight_smile:

Could you try again after executing yum clean all ?
If it does not work could you do yum repolist ? yum list *devtoolset* ?

[root@j91 fitdaq]# yum clean all
Loaded plugins: langpacks
Cleaning repos: centos-sclo-sclo epel ipbus-sw-base ipbus-sw-updates rhscl-centos-release-scl sl sl-fastbugs sl-security
Cleaning up everything
Maybe you want: rm -rf /var/cache/yum, to also free up space taken by orphaned data from disabled or removed repos
[root@j91 fitdaq]#
[root@j91 fitdaq]#
[root@j91 fitdaq]# yum install -y centos-release-scl
Loaded plugins: langpacks
centos-sclo-sclo                                                                                             | 2.9 kB  00:00:00
epel/x86_64/metalink                                                                                         |  24 kB  00:00:00
epel                                                                                                         | 4.7 kB  00:00:00
ipbus-sw-base                                                                                                | 3.6 kB  00:00:00
ipbus-sw-updates                                                                                             | 2.9 kB  00:00:00
rhscl-centos-release-scl                                                                                     | 3.0 kB  00:00:00
sl                                                                                                           | 4.0 kB  00:00:00
sl-fastbugs                                                                                                  | 2.9 kB  00:00:00
sl-security                                                                                                  | 2.9 kB  00:00:00
(1/15): epel/x86_64/group_gz                                                                                 | 266 kB  00:00:00
(2/15): epel/x86_64/updateinfo                                                                               | 917 kB  00:00:00
(3/15): ipbus-sw-base/group_gz                                                                               |  315 B  00:00:00
(4/15): ipbus-sw-base/primary_db                                                                             |  67 kB  00:00:00
(5/15): ipbus-sw-updates/primary_db                                                                          |  46 kB  00:00:00
(6/15): epel/x86_64/primary_db                                                                               | 6.3 MB  00:00:00
(7/15): centos-sclo-sclo/x86_64/primary_db                                                                   | 184 kB  00:00:01
(8/15): sl/x86_64/group_gz                                                                                   | 107 kB  00:00:00
(9/15): rhscl-centos-release-scl/x86_64/primary_db                                                           | 2.2 kB  00:00:00
(10/15): sl-fastbugs/x86_64/updateinfo                                                                       |  85 kB  00:00:00
(11/15): sl-security/x86_64/updateinfo                                                                       |  66 kB  00:00:00
(12/15): sl/x86_64/primary_db                                                                                | 5.0 MB  00:00:03
(13/15): sl/x86_64/updateinfo                                                                                | 2.2 MB  00:00:04
(14/15): sl-fastbugs/x86_64/primary_db                                                                       | 1.4 MB  00:00:04
(15/15): sl-security/x86_64/primary_db                                                                       | 2.9 MB  00:00:05
Package 10:centos-release-scl-6-8.el6.noarch already installed and latest version
Nothing to do
[root@j91 fitdaq]#
[root@j91 fitdaq]# yum-config-manager --enable rhel-server-rhscl-7-rpms
Loaded plugins: langpacks
[root@j91 fitdaq]# yum install -y devtoolset-6
Loaded plugins: langpacks
No package devtoolset-6 available.
Error: Nothing to do
[root@j91 fitdaq]#
[root@j91 fitdaq]#
[root@j91 fitdaq]# yum repolist
Loaded plugins: langpacks
repo id                                               repo name                                                               status
centos-sclo-sclo/x86_64                               CentOS-6 - SCLo sclo                                                       492
epel/x86_64                                           Extra Packages for Enterprise Linux 7 - x86_64                          12,509
ipbus-sw-base                                         IPbus software repository                                                   13
ipbus-sw-updates                                      IPbus software repository updates                                            7
rhscl-centos-release-scl/x86_64                       Copr repo for centos-release-scl owned by rhscl                              2
sl/x86_64                                             Scientific Linux 7.4 - x86_64                                            9,718
sl-fastbugs/x86_64                                    Scientific Linux 7.4 - x86_64 - bugfix updates                           1,451
sl-security/x86_64                                    Scientific Linux 7.4 - x86_64 - security updates                           906
repolist: 25,098
[root@j91 fitdaq]#  yum list *devtoolset*
Loaded plugins: langpacks
Error: No matching Packages to list

I am very much puzzled.

One last command : yum --disablerepo='*' --enablerepo='rhel-server-rhscl-7-rpms' list available

[root@j91 fitdaq]# yum --disablerepo='*' --enablerepo='rhel-server-rhscl-7-rpms' list available
Loaded plugins: langpacks


Error getting repository data for rhel-server-rhscl-7-rpms, repository not found

If you still have the energy : scl -l and ls /opt/rh/

I am just trying to understand what is going with the devtoolset.

sure:

[root@j91 yum.repos.d]# scl -l
[root@j91 yum.repos.d]#
[root@j91 yum.repos.d]# ls /opt/rh/
[root@j91 yum.repos.d]# ls /opt/
cactus  rh
[root@j91 yum.repos.d]# ls -all /opt/rh/
total 8
drwxr-xr-x. 2 root root 4096 Sep  5  2017 .
drwxr-xr-x. 4 root root 4096 Jan 17 13:05 ..
[root@j91 yum.repos.d]#

[root@j91 yum.repos.d]# yum install scl-utils-build
Loaded plugins: langpacks
Resolving Dependencies
–> Running transaction check
—> Package scl-utils-build.x86_64 0:20130529-18.el7_4 will be installed
–> Finished Dependency Resolution

Dependencies Resolved

====================================================================================================================================
 Package                           Arch                     Version                             Repository                     Size
====================================================================================================================================
Installing:
 scl-utils-build                   x86_64                   20130529-18.el7_4                   sl-fastbugs                    17 k

Transaction Summary
====================================================================================================================================
Install  1 Package

Total download size: 17 k
Installed size: 18 k
Is this ok [y/d/N]: y
Downloading packages:
scl-utils-build-20130529-18.el7_4.x86_64.rpm                                                                 |  17 kB  00:00:00
Running transaction check
Running transaction test
Transaction test succeeded
Running transaction
  Installing : scl-utils-build-20130529-18.el7_4.x86_64                                                                         1/1
  Verifying  : scl-utils-build-20130529-18.el7_4.x86_64                                                                         1/1

Installed:
  scl-utils-build.x86_64 0:20130529-18.el7_4





[root@j91 yum.repos.d]# ls -all /etc/yum.repos.d
total 96
drwxr-xr-x.   2 root root  4096 Apr 27 12:55 .
drwxr-xr-x. 115 root root 12288 Apr 27 13:03 ..
-rw-r--r--.   1 root root   509 Jan 18  2016 CentOS-SCLo-scl.repo
-rw-r--r--.   1 root root 15080 Oct  2  2017 epel-release-latest-7.noarch.rpm
-rw-r--r--.   1 root root   951 Oct  2  2017 epel.repo
-rw-r--r--.   1 root root  1050 Oct  2  2017 epel-testing.repo
-rw-r--r--.   1 root root   294 Jan 17 12:55 ipbus-sw.repo
-rw-r--r--.   1 root root 14312 Mar 21 16:28 remi-release-7.rpm
-rw-r--r--.   1 root root   362 Dec 11 12:48 rhscl-centos-release-scl-epel-6.repo
-rw-r--r--.   1 root root   692 Aug 16  2017 sl7-fastbugs.repo
-rw-r--r--.   1 root root  1170 Aug 16  2017 sl7-other.repo
-rw-r--r--.   1 root root   606 Aug 16  2017 sl7.repo
-rw-r--r--.   1 root root  1786 Aug 16  2017 sl7-rolling.repo
-rw-r--r--.   1 root root   694 Aug 16  2017 sl7-security.repo
-rw-r--r--.   1 root root  1073 Aug 16  2017 sl7-testing.repo
[root@j91 yum.repos.d]#
[root@j91 yum.repos.d]# cat CentOS-SCLo-scl.repo
# CentOS-SCLo-sclo.repo
#
# Please see http://wiki.centos.org/SpecialInterestGroup/SCLo for more
# information

[centos-sclo-sclo]
name=CentOS-6 - SCLo sclo
baseurl=http://mirror.centos.org/centos/6/sclo/$basearch/sclo/
gpgcheck=1
enabled=1
gpgkey=file:///etc/pki/rpm-gpg/RPM-GPG-KEY-CentOS-SIG-SCLo

[centos-sclo-sclo-testing]
name=CentOS-6 - SCLo sclo Testing
baseurl=http://buildlogs.centos.org/centos/6/sclo/$basearch/sclo/
gpgcheck=1
enabled=0
gpgkey=file:///etc/pki/rpm-gpg/RPM-GPG-KEY-CentOS-SIG-SCLo

[root@j91 yum.repos.d]#
[root@j91 yum.repos.d]#

also update not hepl

[root@j91 yum.repos.d]# yum clean all
Loaded plugins: langpacks
Cleaning repos: centos-sclo-sclo epel ipbus-sw-base ipbus-sw-updates rhscl-centos-release-scl sl
: sl-fastbugs sl-security
Cleaning up everything
Maybe you want: rm -rf /var/cache/yum, to also free up space taken by orphaned data from disable d or removed repos

[root@j91 yum.repos.d]# yum update

Hi @dfinogee, you did not answer to my question above. Let me try to rephrase: the key problem (I have also modified the post title) is the following:

$> alienv enter O2/latest-dev-o2
WARNING: not updating modulefiles
  • Could you please check your permissions?
  • Are you using, as suggested, the ALIBUILD_WORK_DIR environment variable? What’s its value?
  • Do you have many directories called sw in different places, instead of just a single one?
  1. ~/alice/sw has permission to read and write
[fitdaq@j91 ~]$ ls -all alice/sw/
total 16
drwxrwxr-x. 10 fitdaq fitdaq  126 Apr 26 21:55 .
drwxrwxr-x.  5 fitdaq fitdaq   41 Dec 11 13:55 ..
drwxrwxr-x.  7 fitdaq fitdaq 4096 Apr 26 21:55 BUILD
drwxrwxr-x.  7 fitdaq fitdaq  246 Apr 26 21:55 INSTALLROOT
drwxrwxr-x. 42 fitdaq fitdaq 4096 Apr 25 18:43 MIRROR
drwxrwxr-x.  3 fitdaq fitdaq   25 Jan 15 11:09 MODULES
drwxrwxr-x. 47 fitdaq fitdaq 4096 Apr 26 21:55 slc7_x86-64
drwxrwxr-x. 47 fitdaq fitdaq 4096 Apr 26 19:25 SOURCES
drwxrwxr-x.  3 fitdaq fitdaq   25 Dec 11 14:46 SPECS
drwxrwxr-x.  3 fitdaq fitdaq   25 Dec 11 14:46 TARS
[fitdaq@j91 ~]$ ls -all alice/
total 20
drwxrwxr-x.  5 fitdaq fitdaq   41 Dec 11 13:55 .
drwx------. 33 fitdaq fitdaq 4096 Apr 30 15:33 ..
drwxrwxr-x.  4 fitdaq fitdaq 8192 Apr 25 18:41 alidist
drwxrwxr-x. 19 fitdaq fitdaq 4096 Apr 26 22:14 O2
drwxrwxr-x. 10 fitdaq fitdaq  126 Apr 26 21:55 sw
  1. yes i’m using variable

[fitdaq@j91 ~]$ printenv

HOME=/home/fitdaq
ALIBUILD_WORK_DIR=/home/fitdaq/alice/sw

3)sw also exist at home dir

[fitdaq@j91 ~]$ ls sw/MIRROR/o2/
branches config description HEAD hooks info objects packed-refs refs

i move sw to sw_ and have error while build

[O2/latest-dev-o2] ~ $> aliBuild --defaults o2 build O2

error: object directory /home/fitdaq/sw/MIRROR/o2/objects does not exist; check .git/objects/info/alternates.
fatal: bad object HEAD
ERROR: Unable to detect source code changes.

OK, so for starters just keep the sw pointed at by $ALIBUILD_WORK_DIR, therefore:

  • remove /home/fitdaq/sw (it’s useless and takes up space)
  • keep /home/fitdaq/alice/sw

Can you run the following “debug” command for alienv and post the (long) output here please?

bash -ex $(which alienv) enter O2/latest-dev-o2

Thanks!

So, I install O2 from the begining in neighboring folder and it’work

mkdir alice_2
cd alice_2
aliBuild init
aliBuild build O2 --defaults o2
alienv enter O2/latest-o2

[fitdaq@j91 alice_2]$ alienv enter O2/latest-o2
Currently Loaded Modulefiles:

  1. BASE/1.0 10) protobuf/v3.0.2-1 19) FairRoot/alice-dev-20180413-1
  2. GCC-Toolchain/v6.2.0-alice1-1 11) pythia6/428-alice1-1 20) Vc/1.3.3-1
  3. GSL/v1.16-1 12) boost/v1.66.0-1 21) HepMC3/v3.0.0+git_d43693ce0e-1
  4. Python-modules/1.0-1 13) yaml-cpp/v0.5.2-1 22) O2HLTCATracking/hlt_o2_ca_tracking-v1.7-1
  5. ROOT/v6-12-04-1 14) lhapdf/v6.2.1-alice1-1 23) Monitoring/v1.6.0-1
  6. GEANT3/v2-5-1 15) pythia/v8230-1 24) Configuration/v1.4.1-1
  7. GEANT4/v10.3.3-1 16) ZeroMQ/v4.1.5-1 25) ms_gsl/1-1
  8. vgm/v4-4-1 17) nanomsg/v1.0.0+git_c52f1bedca-1 26) arrow/v0.9.0-alice1-1
  9. GEANT4_VMC/v3-5-1 18) DDS/2.0-1 27) O2/latest-o2
    Use alienv list to list loaded modules. Use exit to exit this environment.
    [O2/latest-o2] ~/alice_2 $> o2sim -h
    Allowed options:
    -h [ --help ] Produce help message.
    -e [ --mcEngine ] arg (=TGeant3) VMC backend to be used.
    -g [ --generator ] arg (=boxgen) Event generator to be used.
    -m [ --modules ] arg (=EMCAL TOF TPC TRD)
    list of detectors
    -n [ --nEvents ] arg (=1) number of events
    –startEvent arg (=0) index of first event to be used (when
    applicable)
    –extKinFile arg (=Kinematics.root) name of kinematics file for event
    generator from file (when applicable)
    -b [ --bMax ] arg (=0) maximum value for impact parameter
    sampling (when applicable)
    –isMT arg (=0) multi-threaded mode (Geant4 only
    -o [ --outPrefix ] arg (=o2sim) prefix of output files

==> The following packages will be picked up from the system:

- lzma
- FreeType
- Python
- zlib
- libpng
- autotools

If this is not you want, you have to uninstall / unload them.

==> The following packages will be build by aliBuild because they couldn’t be picked up from the system:

- Python-modules
- Vc
- CMake
- protobuf
- flatbuffers
- GCC-Toolchain
- yaml-cpp
- nanomsg
- ZeroMQ
- boost
- GSL

it’s not so actual now, thanks alot for your help but it’s answer to the question:
(for old installation)

[fitdaq@j91 ~]$ cd alice
[fitdaq@j91 alice]$ bash -ex $(which alienv) enter O2/latest-dev-o2
++ basename /usr/bin/alienv

  • PROG=alienv
  • [[ -z ‘’ ]]
    ++ ps -e -o pid,command
    ++ grep -E ‘^\s2885\s+’
    ++ awk ‘{print $2}’
    ++ sed -e 's/^-{0,1}(.
    )$/\1/’
  • MODULES_SHELL=bash
  • case “$MODULES_SHELL” in
  • MODULES_SHELL=bash
  • SHELL_NORC_PARAM=–norc
  • ARCHITECTURE=
  • WORK_DIR=
  • NO_REFRESH=
  • DEFAULT_WORK_DIRS=("$ALIBUILD_WORK_DIR" “$ALICE_WORK_DIR” “$ALIBUILD_CHDIR/sw” sw …/sw)
  • ARGS=()
  • COMMAND_IN_ENV=()
  • CLEAN_ENV=1
  • VERBOSE=1
  • [[ 2 -gt 0 ]]
  • case “$1” in
  • ARGS+=("$1")
  • shift
  • [[ 1 -gt 0 ]]
  • case “$1” in
  • ARGS+=("$1")
  • shift
  • [[ 0 -gt 0 ]]
  • ACTION=enter
  • ARGS=("${ARGS[@]:1}")
  • export ALIENVLVL=1
  • ALIENVLVL=1
  • [[ enter == \s\h\e\l\l-\h\e\l\p\e\r ]]
  • [[ -z ‘’ ]]
  • for WORK_DIR in ‘"${DEFAULT_WORK_DIRS[@]}"’
  • [[ -d /home/fitdaq/alice/sw ]]
  • break
  • [[ -z /home/fitdaq/alice/sw ]]
  • [[ ! -d /home/fitdaq/alice/sw ]]
    ++ cd /home/fitdaq/alice/sw
    ++ pwd
  • WORK_DIR=/home/fitdaq/alice/sw
  • [[ -z ‘’ ]]
    +++ dirname /usr/bin/alienv
    ++ /usr/bin/aliBuild architecture
  • ARCHITECTURE=slc7_x86-64
  • [[ -z slc7_x86-64 ]]
  • [[ slc7_x86-64 == <\u\n\k\n\o\w\n> ]]
  • [[ -z slc7_x86-64 ]]
    +++ brew --prefix modules
    +++ true
    ++ PATH=/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/home/fitdaq/.local/bin:/home/fitdaq/bin:/Modules/bin
    ++ which modulecmd
  • MODULECMD=/usr/bin/modulecmd
  • [[ -z /usr/bin/modulecmd ]]
  • [[ -d /home/fitdaq/alice/sw/MODULES/slc7_x86-64 ]]
  • touch /home/fitdaq/alice/sw/MODULES/slc7_x86-64/.testwrite
  • NO_REFRESH=1
  • rm -f /home/fitdaq/alice/sw/MODULES/slc7_x86-64/.testwrite
  • [[ -z 1 ]]
  • printf '\033[33mWARNING: not updating modulefiles\033[m\n’
    WARNING: not updating modulefiles
  • type csrutil
  • export MODULEPATH=/home/fitdaq/alice/sw/MODULES/slc7_x86-64:/usr/share/Modules/modulefiles:/etc/modulefiles
  • MODULEPATH=/home/fitdaq/alice/sw/MODULES/slc7_x86-64:/usr/share/Modules/modulefiles:/etc/modulefiles
  • IGNORE_ERR='Unable to locate a modulefile for ‘’‘Toolchain/’
  • case “$ACTION” in
  • [[ 1 == 1 ]]
    ++ normModules O2/latest-dev-o2
    ++ echo O2/latest-dev-o2
    ++ sed -e ‘s/,/ /g; s/VO_ALICE@//g; s!::!/!g’
  • MODULES=O2/latest-dev-o2
  • existModules O2/latest-dev-o2
  • local MODULE
  • for MODULE in ‘"$@"’
  • /usr/bin/modulecmd bash -t avail
  • grep -qFx O2/latest-dev-o2
    ++ /usr/bin/modulecmd bash add O2/latest-dev-o2
    +++ grep -v 'Unable to locate a modulefile for ‘’'Toolchain/'
    grpc(12):ERROR:105: Unable to locate a modulefile for 'grpc/-'
    Ppconsul(12):ERROR:105: Unable to locate a modulefile for 'Ppconsul/-'
    Ppconsul(12):ERROR:105: Unable to locate a modulefile for ‘Ppconsul/-’
  • eval AGILE_GEN_PATH=/home/fitdaq/alice/sw/slc7_x86-64/pythia6/428-alice1-1 ‘;export’ ‘AGILE_GEN_PATH;BASEDIR=/home/fitdaq/alice/sw/slc7_x86-64’ ‘;export’ ‘BASEDIR;BOOST_ROOT=/home/fitdaq/alice/sw/slc7_x86-64/boost/v1.64.0-alice1-1’ ‘;export’ ‘BOOST_ROOT;COMMON_O2_ROOT=/home/fitdaq/alice/sw/slc7_x86-64/Common-O2/v1.2.0-1’ ‘;export’ ‘COMMON_O2_ROOT;CONFIG_DIR=/home/fitdaq/alice/sw/slc7_x86-64/FairRoot/alice-dev-20171027-1/share/fairbase/examples/common/gconfig’ ‘;export’ ‘CONFIG_DIR;Configuration_ROOT=/home/fitdaq/alice/sw/slc7_x86-64/Configuration/v1.2.1-1’ ‘;export’ ‘Configuration_ROOT;DDS_ROOT=/home/fitdaq/alice/sw/slc7_x86-64/DDS/1.7-1’ ‘;export’ ‘DDS_ROOT;FAIRROOT_ROOT=/home/fitdaq/alice/sw/slc7_x86-64/FairRoot/alice-dev-20171027-1’ ‘;export’ ‘FAIRROOT_ROOT;G3SYS=/home/fitdaq/alice/sw/slc7_x86-64/GEANT3/v2-5-1’ ‘;export’ ‘G3SYS;G4ENSDFSTATEDATA=/home/fitdaq/alice/sw/slc7_x86-64/GEANT4/v10.3.3-1/share/Geant4-10.3.3/data/G4ENSDFSTATE2.1’ ‘;export’ ‘G4ENSDFSTATEDATA;G4INSTALL=/home/fitdaq/alice/sw/slc7_x86-64/GEANT4/v10.3.3-1’ ‘;export’ ‘G4INSTALL;G4INSTALL_DATA=/home/fitdaq/alice/sw/slc7_x86-64/GEANT4/v10.3.3-1/share/’ ‘;export’ ‘G4INSTALL_DATA;G4LEDATA=/home/fitdaq/alice/sw/slc7_x86-64/GEANT4/v10.3.3-1/share/Geant4-10.3.3/data/G4EMLOW6.50’ ‘;export’ ‘G4LEDATA;G4LEVELGAMMADATA=/home/fitdaq/alice/sw/slc7_x86-64/GEANT4/v10.3.3-1/share/Geant4-10.3.3/data/PhotonEvaporation4.3.2’ ‘;export’ ‘G4LEVELGAMMADATA;G4NEUTRONHPDATA=/home/fitdaq/alice/sw/slc7_x86-64/GEANT4/v10.3.3-1/share/Geant4-10.3.3/data/G4NDL4.5’ ‘;export’ ‘G4NEUTRONHPDATA;G4NEUTRONXSDATA=/home/fitdaq/alice/sw/slc7_x86-64/GEANT4/v10.3.3-1/share/Geant4-10.3.3/data/G4NEUTRONXS1.4’ ‘;export’ ‘G4NEUTRONXSDATA;G4RADIOACTIVEDATA=/home/fitdaq/alice/sw/slc7_x86-64/GEANT4/v10.3.3-1/share/Geant4-10.3.3/data/RadioactiveDecay5.1.1’ ‘;export’ ‘G4RADIOACTIVEDATA;G4SAIDXSDATA=/home/fitdaq/alice/sw/slc7_x86-64/GEANT4/v10.3.3-1/share/Geant4-10.3.3/data/G4SAIDDATA1.1’ ‘;export’ ‘G4SAIDXSDATA;G4SYSTEM=Linux-g++’ ‘;export’ ‘G4SYSTEM;G4VMCINSTALL=/home/fitdaq/alice/sw/slc7_x86-64/GEANT4_VMC/v3-5-1’ ‘;export’ ‘G4VMCINSTALL;GCC_TOOLCHAIN_ROOT=/home/fitdaq/alice/sw/slc7_x86-64/GCC-Toolchain/v6.2.0-alice1-1’ ‘;export’ ‘GCC_TOOLCHAIN_ROOT;GEANT3DIR=/home/fitdaq/alice/sw/slc7_x86-64/GEANT3/v2-5-1’ ‘;export’ ‘GEANT3DIR;GEANT3_ROOT=/home/fitdaq/alice/sw/slc7_x86-64/GEANT3/v2-5-1’ ‘;export’ ‘GEANT3_ROOT;GEANT4_ROOT=/home/fitdaq/alice/sw/slc7_x86-64/GEANT4/v10.3.3-1’ ‘;export’ ‘GEANT4_ROOT;GEANT4_VMC_ROOT=/home/fitdaq/alice/sw/slc7_x86-64/GEANT4_VMC/v3-5-1’ ‘;export’ ‘GEANT4_VMC_ROOT;GEOMPATH=/home/fitdaq/alice/sw/slc7_x86-64/FairRoot/alice-dev-20171027-1/share/fairbase/examples/common/geometry’ ‘;export’ ‘GEOMPATH;GSL_ROOT=/home/fitdaq/alice/sw/slc7_x86-64/GSL/v1.16-1’ ‘;export’ ‘GSL_ROOT;HEPMC3_ROOT=/home/fitdaq/alice/sw/slc7_x86-64/HepMC3/3.0.0-1’ ‘;export’ ‘HEPMC3_ROOT;LD_LIBRARY_PATH=/home/fitdaq/alice/sw/slc7_x86-64/O2/dev-1/lib:/home/fitdaq/alice/sw/slc7_x86-64/Monitoring/v1.3.0-1/lib:/home/fitdaq/alice/sw/slc7_x86-64/Configuration/v1.2.1-1/lib:/home/fitdaq/alice/sw/slc7_x86-64/Common-O2/v1.2.0-1/lib:/home/fitdaq/alice/sw/slc7_x86-64/O2HLTCATracking/hlt_o2_ca_tracking-v1.3-1/lib:/home/fitdaq/alice/sw/slc7_x86-64/HepMC3/3.0.0-1/lib:/home/fitdaq/alice/sw/slc7_x86-64/Vc/1.3.2-1/lib:/home/fitdaq/alice/sw/slc7_x86-64/FairRoot/alice-dev-20171027-1/lib:/home/fitdaq/alice/sw/slc7_x86-64/DDS/1.7-1/lib:/home/fitdaq/alice/sw/slc7_x86-64/nanomsg/v1.0.0+git_c52f1bedca-1/lib:/home/fitdaq/alice/sw/slc7_x86-64/ZeroMQ/v4.1.5-1/lib:/home/fitdaq/alice/sw/slc7_x86-64/pythia/v8230-1/lib:/home/fitdaq/alice/sw/slc7_x86-64/lhapdf/v6.1.6-1/lib:/home/fitdaq/alice/sw/slc7_x86-64/yaml-cpp/v0.5.2-1/lib:/home/fitdaq/alice/sw/slc7_x86-64/boost/v1.64.0-alice1-1/lib:/home/fitdaq/alice/sw/slc7_x86-64/pythia6/428-alice1-1/lib:/home/fitdaq/alice/sw/slc7_x86-64/protobuf/v3.0.2-1/lib:/home/fitdaq/alice/sw/slc7_x86-64/GEANT4_VMC/v3-5-1/lib:/home/fitdaq/alice/sw/slc7_x86-64/vgm/v4-4-1/lib:/home/fitdaq/alice/sw/slc7_x86-64/GEANT4/v10.3.3-1/lib:/home/fitdaq/alice/sw/slc7_x86-64/GEANT3/v2-5-1/lib64:/home/fitdaq/alice/sw/slc7_x86-64/ROOT/v6-10-08-1/lib:/home/fitdaq/alice/sw/slc7_x86-64/GSL/v1.16-1/lib:/home/fitdaq/alice/sw/slc7_x86-64/GCC-Toolchain/v6.2.0-alice1-1/lib64:/home/fitdaq/alice/sw/slc7_x86-64/GCC-Toolchain/v6.2.0-alice1-1/lib’ ‘;export’ ‘LD_LIBRARY_PATH;LHAPATH=/home/fitdaq/alice/sw/slc7_x86-64/lhapdf/v6.1.6-1/share/LHAPDF’ ‘;export’ ‘LHAPATH;LHAPDF_ROOT=/home/fitdaq/alice/sw/slc7_x86-64/lhapdf/v6.1.6-1’ ‘;export’ ‘LHAPDF_ROOT;LOADEDMODULES=BASE/1.0:GCC-Toolchain/v6.2.0-alice1-1:GSL/v1.16-1:ROOT/v6-10-08-1:GEANT3/v2-5-1:GEANT4/v10.3.3-1:vgm/v4-4-1:GEANT4_VMC/v3-5-1:protobuf/v3.0.2-1:pythia6/428-alice1-1:boost/v1.64.0-alice1-1:yaml-cpp/v0.5.2-1:lhapdf/v6.1.6-1:pythia/v8230-1:ZeroMQ/v4.1.5-1:nanomsg/v1.0.0+git_c52f1bedca-1:DDS/1.7-1:FairRoot/alice-dev-20171027-1:Vc/1.3.2-1:HepMC3/3.0.0-1:O2HLTCATracking/hlt_o2_ca_tracking-v1.3-1:Common-O2/v1.2.0-1:Configuration/v1.2.1-1:Monitoring/v1.3.0-1:O2/latest-dev-o2’ ‘;export’ ‘LOADEDMODULES;MANPATH=/home/fitdaq/alice/sw/slc7_x86-64/O2/dev-1/share/man:/usr/share/man:/usr/local/share/man’ ‘;export’ ‘MANPATH;Monitoring_ROOT=/home/fitdaq/alice/sw/slc7_x86-64/Monitoring/v1.3.0-1’ ‘;export’ ‘Monitoring_ROOT;NANOMSG_ROOT=/home/fitdaq/alice/sw/slc7_x86-64/nanomsg/v1.0.0+git_c52f1bedca-1’ ‘;export’ ‘NANOMSG_ROOT;O2_ROOT=/home/fitdaq/alice/sw/slc7_x86-64/O2/dev-1’ ‘;export’ ‘O2_ROOT;PATH=/home/fitdaq/alice/sw/slc7_x86-64/O2/dev-1/bin:/home/fitdaq/alice/sw/slc7_x86-64/Monitoring/v1.3.0-1/bin:/home/fitdaq/alice/sw/slc7_x86-64/Configuration/v1.2.1-1/bin:/home/fitdaq/alice/sw/slc7_x86-64/Common-O2/v1.2.0-1/bin:/home/fitdaq/alice/sw/slc7_x86-64/HepMC3/3.0.0-1/bin:/home/fitdaq/alice/sw/slc7_x86-64/Vc/1.3.2-1/bin:/home/fitdaq/alice/sw/slc7_x86-64/FairRoot/alice-dev-20171027-1/bin:/home/fitdaq/alice/sw/slc7_x86-64/DDS/1.7-1/bin:/home/fitdaq/alice/sw/slc7_x86-64/nanomsg/v1.0.0+git_c52f1bedca-1/bin:/home/fitdaq/alice/sw/slc7_x86-64/pythia/v8230-1/bin:/home/fitdaq/alice/sw/slc7_x86-64/lhapdf/v6.1.6-1/bin:/home/fitdaq/alice/sw/slc7_x86-64/protobuf/v3.0.2-1/bin:/home/fitdaq/alice/sw/slc7_x86-64/GEANT4_VMC/v3-5-1/bin:/home/fitdaq/alice/sw/slc7_x86-64/GEANT4/v10.3.3-1/bin:/home/fitdaq/alice/sw/slc7_x86-64/GEANT3/v2-5-1/bin:/home/fitdaq/alice/sw/slc7_x86-64/ROOT/v6-10-08-1/bin:/home/fitdaq/alice/sw/slc7_x86-64/GSL/v1.16-1/bin:/home/fitdaq/alice/sw/slc7_x86-64/GCC-Toolchain/v6.2.0-alice1-1/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/home/fitdaq/.local/bin:/home/fitdaq/bin’ ‘;export’ ‘PATH;PROTOBUF_ROOT=/home/fitdaq/alice/sw/slc7_x86-64/protobuf/v3.0.2-1’ ‘;export’ ‘PROTOBUF_ROOT;PYTHIA6_ROOT=/home/fitdaq/alice/sw/slc7_x86-64/pythia6/428-alice1-1’ ‘;export’ ‘PYTHIA6_ROOT;PYTHIA8=/home/fitdaq/alice/sw/slc7_x86-64/pythia/v8230-1’ ‘;export’ ‘PYTHIA8;PYTHIA8DATA=/home/fitdaq/alice/sw/slc7_x86-64/pythia/v8230-1/share/Pythia8/xmldoc’ ‘;export’ ‘PYTHIA8DATA;PYTHIA_ROOT=/home/fitdaq/alice/sw/slc7_x86-64/pythia/v8230-1’ ‘;export’ ‘PYTHIA_ROOT;PYTHONPATH=/home/fitdaq/alice/sw/slc7_x86-64/ROOT/v6-10-08-1/lib’ ‘;export’ ‘PYTHONPATH;ROOTSYS=/home/fitdaq/alice/sw/slc7_x86-64/ROOT/v6-10-08-1’ ‘;export’ ‘ROOTSYS;ROOT_BASEDIR=/home/fitdaq/alice/sw/slc7_x86-64/ROOT’ ‘;export’ ‘ROOT_BASEDIR;ROOT_INCLUDE_PATH=/home/fitdaq/alice/sw/slc7_x86-64/O2/dev-1/include:/home/fitdaq/alice/sw/slc7_x86-64/FairRoot/alice-dev-20171027-1/include’ ‘;export’ ‘ROOT_INCLUDE_PATH;ROOT_RELEASE=v6-10-08-1’ ‘;export’ ‘ROOT_RELEASE;VC_ROOT=/home/fitdaq/alice/sw/slc7_x86-64/Vc/1.3.2-1’ ‘;export’ ‘VC_ROOT;VGM_ROOT=/home/fitdaq/alice/sw/slc7_x86-64/vgm/v4-4-1’ ‘;export’ ‘VGM_ROOT;VMCWORKDIR=/home/fitdaq/alice/sw/slc7_x86-64/O2/dev-1/share’ ‘;export’ ‘VMCWORKDIR;YAMLCPP=/home/fitdaq/alice/sw/slc7_x86-64/yaml-cpp/v0.5.2-1’ ‘;export’ ‘YAMLCPP;ZEROMQ_ROOT=/home/fitdaq/alice/sw/slc7_x86-64/ZeroMQ/v4.1.5-1’ ‘;export’ ‘ZEROMQ_ROOT;LMFILES=/home/fitdaq/alice/sw/MODULES/slc7_x86-64/BASE/1.0:/home/fitdaq/alice/sw/MODULES/slc7_x86-64/GCC-Toolchain/v6.2.0-alice1-1:/home/fitdaq/alice/sw/MODULES/slc7_x86-64/GSL/v1.16-1:/home/fitdaq/alice/sw/MODULES/slc7_x86-64/ROOT/v6-10-08-1:/home/fitdaq/alice/sw/MODULES/slc7_x86-64/GEANT3/v2-5-1:/home/fitdaq/alice/sw/MODULES/slc7_x86-64/GEANT4/v10.3.3-1:/home/fitdaq/alice/sw/MODULES/slc7_x86-64/vgm/v4-4-1:/home/fitdaq/alice/sw/MODULES/slc7_x86-64/GEANT4_VMC/v3-5-1:/home/fitdaq/alice/sw/MODULES/slc7_x86-64/protobuf/v3.0.2-1:/home/fitdaq/alice/sw/MODULES/slc7_x86-64/pythia6/428-alice1-1:/home/fitdaq/alice/sw/MODULES/slc7_x86-64/boost/v1.64.0-alice1-1:/home/fitdaq/alice/sw/MODULES/slc7_x86-64/yaml-cpp/v0.5.2-1:/home/fitdaq/alice/sw/MODULES/slc7_x86-64/lhapdf/v6.1.6-1:/home/fitdaq/alice/sw/MODULES/slc7_x86-64/pythia/v8230-1:/home/fitdaq/alice/sw/MODULES/slc7_x86-64/ZeroMQ/v4.1.5-1:/home/fitdaq/alice/sw/MODULES/slc7_x86-64/nanomsg/v1.0.0+git_c52f1bedca-1:/home/fitdaq/alice/sw/MODULES/slc7_x86-64/DDS/1.7-1:/home/fitdaq/alice/sw/MODULES/slc7_x86-64/FairRoot/alice-dev-20171027-1:/home/fitdaq/alice/sw/MODULES/slc7_x86-64/Vc/1.3.2-1:/home/fitdaq/alice/sw/MODULES/slc7_x86-64/HepMC3/3.0.0-1:/home/fitdaq/alice/sw/MODULES/slc7_x86-64/O2HLTCATracking/hlt_o2_ca_tracking-v1.3-1:/home/fitdaq/alice/sw/MODULES/slc7_x86-64/Common-O2/v1.2.0-1:/home/fitdaq/alice/sw/MODULES/slc7_x86-64/Configuration/v1.2.1-1:/home/fitdaq/alice/sw/MODULES/slc7_x86-64/Monitoring/v1.3.0-1:/home/fitdaq/alice/sw/MODULES/slc7_x86-64/O2/latest-dev-o2’ ‘;export’ ‘LMFILES;’
    ++ AGILE_GEN_PATH=/home/fitdaq/alice/sw/slc7_x86-64/pythia6/428-alice1-1
    ++ export AGILE_GEN_PATH
    ++ BASEDIR=/home/fitdaq/alice/sw/slc7_x86-64
    ++ export BASEDIR
    ++ BOOST_ROOT=/home/fitdaq/alice/sw/slc7_x86-64/boost/v1.64.0-alice1-1
    ++ export BOOST_ROOT
    ++ COMMON_O2_ROOT=/home/fitdaq/alice/sw/slc7_x86-64/Common-O2/v1.2.0-1
    ++ export COMMON_O2_ROOT
    ++ CONFIG_DIR=/home/fitdaq/alice/sw/slc7_x86-64/FairRoot/alice-dev-20171027-1/share/fairbase/examples/common/gconfig
    ++ export CONFIG_DIR
    ++ Configuration_ROOT=/home/fitdaq/alice/sw/slc7_x86-64/Configuration/v1.2.1-1
    ++ export Configuration_ROOT
    ++ DDS_ROOT=/home/fitdaq/alice/sw/slc7_x86-64/DDS/1.7-1
    ++ export DDS_ROOT
    ++ FAIRROOT_ROOT=/home/fitdaq/alice/sw/slc7_x86-64/FairRoot/alice-dev-20171027-1
    ++ export FAIRROOT_ROOT
    ++ G3SYS=/home/fitdaq/alice/sw/slc7_x86-64/GEANT3/v2-5-1
    ++ export G3SYS
    ++ G4ENSDFSTATEDATA=/home/fitdaq/alice/sw/slc7_x86-64/GEANT4/v10.3.3-1/share/Geant4-10.3.3/data/G4ENSDFSTATE2.1
    ++ export G4ENSDFSTATEDATA
    ++ G4INSTALL=/home/fitdaq/alice/sw/slc7_x86-64/GEANT4/v10.3.3-1
    ++ export G4INSTALL
    ++ G4INSTALL_DATA=/home/fitdaq/alice/sw/slc7_x86-64/GEANT4/v10.3.3-1/share/
    ++ export G4INSTALL_DATA
    ++ G4LEDATA=/home/fitdaq/alice/sw/slc7_x86-64/GEANT4/v10.3.3-1/share/Geant4-10.3.3/data/G4EMLOW6.50
    ++ export G4LEDATA
    ++ G4LEVELGAMMADATA=/home/fitdaq/alice/sw/slc7_x86-64/GEANT4/v10.3.3-1/share/Geant4-10.3.3/data/PhotonEvaporation4.3.2
    ++ export G4LEVELGAMMADATA
    ++ G4NEUTRONHPDATA=/home/fitdaq/alice/sw/slc7_x86-64/GEANT4/v10.3.3-1/share/Geant4-10.3.3/data/G4NDL4.5
    ++ export G4NEUTRONHPDATA
    ++ G4NEUTRONXSDATA=/home/fitdaq/alice/sw/slc7_x86-64/GEANT4/v10.3.3-1/share/Geant4-10.3.3/data/G4NEUTRONXS1.4
    ++ export G4NEUTRONXSDATA
    ++ G4RADIOACTIVEDATA=/home/fitdaq/alice/sw/slc7_x86-64/GEANT4/v10.3.3-1/share/Geant4-10.3.3/data/RadioactiveDecay5.1.1
    ++ export G4RADIOACTIVEDATA
    ++ G4SAIDXSDATA=/home/fitdaq/alice/sw/slc7_x86-64/GEANT4/v10.3.3-1/share/Geant4-10.3.3/data/G4SAIDDATA1.1
    ++ export G4SAIDXSDATA
    ++ G4SYSTEM=Linux-g++
    ++ export G4SYSTEM
    ++ G4VMCINSTALL=/home/fitdaq/alice/sw/slc7_x86-64/GEANT4_VMC/v3-5-1
    ++ export G4VMCINSTALL
    ++ GCC_TOOLCHAIN_ROOT=/home/fitdaq/alice/sw/slc7_x86-64/GCC-Toolchain/v6.2.0-alice1-1
    ++ export GCC_TOOLCHAIN_ROOT
    ++ GEANT3DIR=/home/fitdaq/alice/sw/slc7_x86-64/GEANT3/v2-5-1
    ++ export GEANT3DIR
    ++ GEANT3_ROOT=/home/fitdaq/alice/sw/slc7_x86-64/GEANT3/v2-5-1
    ++ export GEANT3_ROOT
    ++ GEANT4_ROOT=/home/fitdaq/alice/sw/slc7_x86-64/GEANT4/v10.3.3-1
    ++ export GEANT4_ROOT
    ++ GEANT4_VMC_ROOT=/home/fitdaq/alice/sw/slc7_x86-64/GEANT4_VMC/v3-5-1
    ++ export GEANT4_VMC_ROOT
    ++ GEOMPATH=/home/fitdaq/alice/sw/slc7_x86-64/FairRoot/alice-dev-20171027-1/share/fairbase/examples/common/geometry
    ++ export GEOMPATH
    ++ GSL_ROOT=/home/fitdaq/alice/sw/slc7_x86-64/GSL/v1.16-1
    ++ export GSL_ROOT
    ++ HEPMC3_ROOT=/home/fitdaq/alice/sw/slc7_x86-64/HepMC3/3.0.0-1
    ++ export HEPMC3_ROOT
    ++ LD_LIBRARY_PATH=/home/fitdaq/alice/sw/slc7_x86-64/O2/dev-1/lib:/home/fitdaq/alice/sw/slc7_x86-64/Monitoring/v1.3.0-1/lib:/home/fitdaq/alice/sw/slc7_x86-64/Configuration/v1.2.1-1/lib:/home/fitdaq/alice/sw/slc7_x86-64/Common-O2/v1.2.0-1/lib:/home/fitdaq/alice/sw/slc7_x86-64/O2HLTCATracking/hlt_o2_ca_tracking-v1.3-1/lib:/home/fitdaq/alice/sw/slc7_x86-64/HepMC3/3.0.0-1/lib:/home/fitdaq/alice/sw/slc7_x86-64/Vc/1.3.2-1/lib:/home/fitdaq/alice/sw/slc7_x86-64/FairRoot/alice-dev-20171027-1/lib:/home/fitdaq/alice/sw/slc7_x86-64/DDS/1.7-1/lib:/home/fitdaq/alice/sw/slc7_x86-64/nanomsg/v1.0.0+git_c52f1bedca-1/lib:/home/fitdaq/alice/sw/slc7_x86-64/ZeroMQ/v4.1.5-1/lib:/home/fitdaq/alice/sw/slc7_x86-64/pythia/v8230-1/lib:/home/fitdaq/alice/sw/slc7_x86-64/lhapdf/v6.1.6-1/lib:/home/fitdaq/alice/sw/slc7_x86-64/yaml-cpp/v0.5.2-1/lib:/home/fitdaq/alice/sw/slc7_x86-64/boost/v1.64.0-alice1-1/lib:/home/fitdaq/alice/sw/slc7_x86-64/pythia6/428-alice1-1/lib:/home/fitdaq/alice/sw/slc7_x86-64/protobuf/v3.0.2-1/lib:/home/fitdaq/alice/sw/slc7_x86-64/GEANT4_VMC/v3-5-1/lib:/home/fitdaq/alice/sw/slc7_x86-64/vgm/v4-4-1/lib:/home/fitdaq/alice/sw/slc7_x86-64/GEANT4/v10.3.3-1/lib:/home/fitdaq/alice/sw/slc7_x86-64/GEANT3/v2-5-1/lib64:/home/fitdaq/alice/sw/slc7_x86-64/ROOT/v6-10-08-1/lib:/home/fitdaq/alice/sw/slc7_x86-64/GSL/v1.16-1/lib:/home/fitdaq/alice/sw/slc7_x86-64/GCC-Toolchain/v6.2.0-alice1-1/lib64:/home/fitdaq/alice/sw/slc7_x86-64/GCC-Toolchain/v6.2.0-alice1-1/lib
    ++ export LD_LIBRARY_PATH
    ++ LHAPATH=/home/fitdaq/alice/sw/slc7_x86-64/lhapdf/v6.1.6-1/share/LHAPDF
    ++ export LHAPATH
    ++ LHAPDF_ROOT=/home/fitdaq/alice/sw/slc7_x86-64/lhapdf/v6.1.6-1
    ++ export LHAPDF_ROOT
    ++ LOADEDMODULES=BASE/1.0:GCC-Toolchain/v6.2.0-alice1-1:GSL/v1.16-1:ROOT/v6-10-08-1:GEANT3/v2-5-1:GEANT4/v10.3.3-1:vgm/v4-4-1:GEANT4_VMC/v3-5-1:protobuf/v3.0.2-1:pythia6/428-alice1-1:boost/v1.64.0-alice1-1:yaml-cpp/v0.5.2-1:lhapdf/v6.1.6-1:pythia/v8230-1:ZeroMQ/v4.1.5-1:nanomsg/v1.0.0+git_c52f1bedca-1:DDS/1.7-1:FairRoot/alice-dev-20171027-1:Vc/1.3.2-1:HepMC3/3.0.0-1:O2HLTCATracking/hlt_o2_ca_tracking-v1.3-1:Common-O2/v1.2.0-1:Configuration/v1.2.1-1:Monitoring/v1.3.0-1:O2/latest-dev-o2
    ++ export LOADEDMODULES
    ++ MANPATH=/home/fitdaq/alice/sw/slc7_x86-64/O2/dev-1/share/man:/usr/share/man:/usr/local/share/man
    ++ export MANPATH
    ++ Monitoring_ROOT=/home/fitdaq/alice/sw/slc7_x86-64/Monitoring/v1.3.0-1
    ++ export Monitoring_ROOT
    ++ NANOMSG_ROOT=/home/fitdaq/alice/sw/slc7_x86-64/nanomsg/v1.0.0+git_c52f1bedca-1
    ++ export NANOMSG_ROOT
    ++ O2_ROOT=/home/fitdaq/alice/sw/slc7_x86-64/O2/dev-1
    ++ export O2_ROOT
    ++ PATH=/home/fitdaq/alice/sw/slc7_x86-64/O2/dev-1/bin:/home/fitdaq/alice/sw/slc7_x86-64/Monitoring/v1.3.0-1/bin:/home/fitdaq/alice/sw/slc7_x86-64/Configuration/v1.2.1-1/bin:/home/fitdaq/alice/sw/slc7_x86-64/Common-O2/v1.2.0-1/bin:/home/fitdaq/alice/sw/slc7_x86-64/HepMC3/3.0.0-1/bin:/home/fitdaq/alice/sw/slc7_x86-64/Vc/1.3.2-1/bin:/home/fitdaq/alice/sw/slc7_x86-64/FairRoot/alice-dev-20171027-1/bin:/home/fitdaq/alice/sw/slc7_x86-64/DDS/1.7-1/bin:/home/fitdaq/alice/sw/slc7_x86-64/nanomsg/v1.0.0+git_c52f1bedca-1/bin:/home/fitdaq/alice/sw/slc7_x86-64/pythia/v8230-1/bin:/home/fitdaq/alice/sw/slc7_x86-64/lhapdf/v6.1.6-1/bin:/home/fitdaq/alice/sw/slc7_x86-64/protobuf/v3.0.2-1/bin:/home/fitdaq/alice/sw/slc7_x86-64/GEANT4_VMC/v3-5-1/bin:/home/fitdaq/alice/sw/slc7_x86-64/GEANT4/v10.3.3-1/bin:/home/fitdaq/alice/sw/slc7_x86-64/GEANT3/v2-5-1/bin:/home/fitdaq/alice/sw/slc7_x86-64/ROOT/v6-10-08-1/bin:/home/fitdaq/alice/sw/slc7_x86-64/GSL/v1.16-1/bin:/home/fitdaq/alice/sw/slc7_x86-64/GCC-Toolchain/v6.2.0-alice1-1/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/home/fitdaq/.local/bin:/home/fitdaq/bin
    ++ export PATH
    ++ PROTOBUF_ROOT=/home/fitdaq/alice/sw/slc7_x86-64/protobuf/v3.0.2-1
    ++ export PROTOBUF_ROOT
    ++ PYTHIA6_ROOT=/home/fitdaq/alice/sw/slc7_x86-64/pythia6/428-alice1-1
    ++ export PYTHIA6_ROOT
    ++ PYTHIA8=/home/fitdaq/alice/sw/slc7_x86-64/pythia/v8230-1
    ++ export PYTHIA8
    ++ PYTHIA8DATA=/home/fitdaq/alice/sw/slc7_x86-64/pythia/v8230-1/share/Pythia8/xmldoc
    ++ export PYTHIA8DATA
    ++ PYTHIA_ROOT=/home/fitdaq/alice/sw/slc7_x86-64/pythia/v8230-1
    ++ export PYTHIA_ROOT
    ++ PYTHONPATH=/home/fitdaq/alice/sw/slc7_x86-64/ROOT/v6-10-08-1/lib
    ++ export PYTHONPATH
    ++ ROOTSYS=/home/fitdaq/alice/sw/slc7_x86-64/ROOT/v6-10-08-1
    ++ export ROOTSYS
    ++ ROOT_BASEDIR=/home/fitdaq/alice/sw/slc7_x86-64/ROOT
    ++ export ROOT_BASEDIR
    ++ ROOT_INCLUDE_PATH=/home/fitdaq/alice/sw/slc7_x86-64/O2/dev-1/include:/home/fitdaq/alice/sw/slc7_x86-64/FairRoot/alice-dev-20171027-1/include
    ++ export ROOT_INCLUDE_PATH
    ++ ROOT_RELEASE=v6-10-08-1
    ++ export ROOT_RELEASE
    ++ VC_ROOT=/home/fitdaq/alice/sw/slc7_x86-64/Vc/1.3.2-1
    ++ export VC_ROOT
    ++ VGM_ROOT=/home/fitdaq/alice/sw/slc7_x86-64/vgm/v4-4-1
    ++ export VGM_ROOT
    ++ VMCWORKDIR=/home/fitdaq/alice/sw/slc7_x86-64/O2/dev-1/share
    ++ export VMCWORKDIR
    ++ YAMLCPP=/home/fitdaq/alice/sw/slc7_x86-64/yaml-cpp/v0.5.2-1
    ++ export YAMLCPP
    ++ ZEROMQ_ROOT=/home/fitdaq/alice/sw/slc7_x86-64/ZeroMQ/v4.1.5-1
    ++ export ZEROMQ_ROOT
    ++ LMFILES=/home/fitdaq/alice/sw/MODULES/slc7_x86-64/BASE/1.0:/home/fitdaq/alice/sw/MODULES/slc7_x86-64/GCC-Toolchain/v6.2.0-alice1-1:/home/fitdaq/alice/sw/MODULES/slc7_x86-64/GSL/v1.16-1:/home/fitdaq/alice/sw/MODULES/slc7_x86-64/ROOT/v6-10-08-1:/home/fitdaq/alice/sw/MODULES/slc7_x86-64/GEANT3/v2-5-1:/home/fitdaq/alice/sw/MODULES/slc7_x86-64/GEANT4/v10.3.3-1:/home/fitdaq/alice/sw/MODULES/slc7_x86-64/vgm/v4-4-1:/home/fitdaq/alice/sw/MODULES/slc7_x86-64/GEANT4_VMC/v3-5-1:/home/fitdaq/alice/sw/MODULES/slc7_x86-64/protobuf/v3.0.2-1:/home/fitdaq/alice/sw/MODULES/slc7_x86-64/pythia6/428-alice1-1:/home/fitdaq/alice/sw/MODULES/slc7_x86-64/boost/v1.64.0-alice1-1:/home/fitdaq/alice/sw/MODULES/slc7_x86-64/yaml-cpp/v0.5.2-1:/home/fitdaq/alice/sw/MODULES/slc7_x86-64/lhapdf/v6.1.6-1:/home/fitdaq/alice/sw/MODULES/slc7_x86-64/pythia/v8230-1:/home/fitdaq/alice/sw/MODULES/slc7_x86-64/ZeroMQ/v4.1.5-1:/home/fitdaq/alice/sw/MODULES/slc7_x86-64/nanomsg/v1.0.0+git_c52f1bedca-1:/home/fitdaq/alice/sw/MODULES/slc7_x86-64/DDS/1.7-1:/home/fitdaq/alice/sw/MODULES/slc7_x86-64/FairRoot/alice-dev-20171027-1:/home/fitdaq/alice/sw/MODULES/slc7_x86-64/Vc/1.3.2-1:/home/fitdaq/alice/sw/MODULES/slc7_x86-64/HepMC3/3.0.0-1:/home/fitdaq/alice/sw/MODULES/slc7_x86-64/O2HLTCATracking/hlt_o2_ca_tracking-v1.3-1:/home/fitdaq/alice/sw/MODULES/slc7_x86-64/Common-O2/v1.2.0-1:/home/fitdaq/alice/sw/MODULES/slc7_x86-64/Configuration/v1.2.1-1:/home/fitdaq/alice/sw/MODULES/slc7_x86-64/Monitoring/v1.3.0-1:/home/fitdaq/alice/sw/MODULES/slc7_x86-64/O2/latest-dev-o2
    ++ export LMFILES
  • [[ ! -z 1 ]]
  • case $MODULES_SHELL in
  • export 'PS1=[O2/latest-dev-o2] \w $> ’
  • PS1=’[O2/latest-dev-o2] \w $> ’
  • /usr/bin/modulecmd bash list
    Currently Loaded Modulefiles:
    1. BASE/1.0 14) pythia/v8230-1
    2. GCC-Toolchain/v6.2.0-alice1-1 15) ZeroMQ/v4.1.5-1
    3. GSL/v1.16-1 16) nanomsg/v1.0.0+git_c52f1bedca-1
    4. ROOT/v6-10-08-1 17) DDS/1.7-1
    5. GEANT3/v2-5-1 18) FairRoot/alice-dev-20171027-1
    6. GEANT4/v10.3.3-1 19) Vc/1.3.2-1
    7. vgm/v4-4-1 20) HepMC3/3.0.0-1
    8. GEANT4_VMC/v3-5-1 21) O2HLTCATracking/hlt_o2_ca_tracking-v1.3-1
    9. protobuf/v3.0.2-1 22) Common-O2/v1.2.0-1
  1. pythia6/428-alice1-1 23) Configuration/v1.2.1-1
  2. boost/v1.64.0-alice1-1 24) Monitoring/v1.3.0-1
  3. yaml-cpp/v0.5.2-1 25) O2/latest-dev-o2
  4. lhapdf/v6.1.6-1
  • printf '\033[36mUse \033[35malienv list\033[36m to list loaded modules. '
    Use alienv list to list loaded modules. + printf 'Use \033[35mexit\033[36m to exit this environment.\033[m\n’
    Use exit to exit this environment.
  • exec env bash --norc -i

OK, thanks for your patience! Eventually, I think, there was some confusion due to the number of sw folders on the system.

Every time you launch alienv, by default it scans your software collection and updates its dependency cache. When you see a warning saying it couldn’t update the “modulefiles”, it means that alienv was either told not to (with the --no-refresh option, which you don’t use), or it detected it couldn’t write in the destination directory.

For the curious, here’s the test performed: alienv actually tries to write a dummy file and if it fails, it assumes the directory is read-only and proceeds with a potentially outdated cache.

In your case:

  • it could not write to the cache for some reason,
  • the cache was outdated and alienv enter kept picking the wrong, old modulefiles, resulting in the runtime errors you have seen.

Thanks for your patience!